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Detailed information on CNT3075586


BLAST search results

BLAST vs Swiss-Prot:
sp|P34790|CP18C_ARATH, E-value = 3e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518775Brassica junceaJuglans regia22.877.8185.12121forward
CNT30618033Brassica junceaSesamum indicum23.0615.186.89122forward
CNT3071229Brassica junceaQuercus suber20.7914.9185.45110forward
CNT30632225Brassica junceaVigna unguiculata20.7922.6885.45110forward
CNT30201798Brassica junceaPisum sativum13.0429.6186.9669forward
CNT30506710Brassica junceaNicotiana attenuata13.0424.9185.5169forward
CNT30710775Brassica junceaGlycine max22.6821.3582.5120forward
CNT3043301Brassica junceaPrunus dulcis30.4322.5883.85161forward
CNT30167183Brassica junceaPistacia vera41.7835.382.81221forward
CNT30569495Brassica junceaActinidia chinensis52.1748.7682.97276forward
CNT3084160Brassica junceaVigna radiata20.7912.8182.73110forward
CNT30145071Brassica junceaMedicago truncatula52.5559.7883.45278forward
CNT30613544Brassica junceaArabis alpina31.5729.0982.04167forward
CNT30597524Brassica junceaFraxinus excelsior14.5636.3284.4277forward
CNT3010238Brassica junceaZea mays22.1211.8481.2117forward
CNT30653963Brassica junceaRosa chinensis20.7913.2289.09110forward
CNT30364404Brassica junceaSorghum bicolor32.5124.6481.98172forward
CNT30155236Brassica junceaPrunus persica30.4318.1383.85161forward
CNT30706413Brassica junceaPrunus avium16.8226.9787.6489forward
CNT3023247Brassica junceaPopulus trichocarpa21.9317.9683.62116forward
CNT3035654Brassica junceaCucumis melo17.5833.8287.193forward
CNT30724737Brassica junceaLupinus angustifolius20.0415.6886.79106forward

Expression of CNT3075586

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MDSPPVPFPAVKSPPWHMKLGITRWKEDPLKWRGFPLRPTPFSPVHRALKFSAVFGVLSVYNSITILPAAWPLMFMSKNTFGNAIVG*

>peptide 2 (35 aa)
MREIYLRELSTIGDNHRLRRLSRRRSHLLDRLHHV*

Sequence

>CNT3075586
ACCAAACATACATAACATATATAGGACAAGGACGCTGACGCTATAATTTAAAATGAGGATAGATGAGAGAGATCTATCTAAGAGAGCTGTCCACAATCGG
CGATAACCACCGGCTTCGACGGCTTTCCAGACGACGATCCCACCTTCTCGATCGCCTTCACCACGTCTAACCCTTCCACCACCTGCCCGAACACCACGTG
CTTACCGTCAAGCCAATCGGTTTTTACGGTGCAGATGAAGAACTGAGATCCGTTGATGGACTCACCTCCTGTCCCGTTTCCCGCGGTGAAATCACCTCCC
TGGCACATGAAACTGGGGATCACTCGGTGGAAGGAAGATCCCTTGAAGTGGAGGGGCTTTCCCTTACGCCCCACTCCCTTCTCTCCAGTGCACAGAGCTC
TGAAATTCTCAGCCGTCTTCGGCGTCTTATCCGTATACAACTCCATCACGATCCTTCCCGCTGCCTGGCCGTTGATGTTTATGTCGAAGAACACCTTTGG
GAACGCCATTGTTGGTTAGCTTTGAGATA