« Back to Oryza sativa search


Detailed information on CNT30691021


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671097Oryza sativaSetaria viridis53.6939.4886.26182forward
CNT30702610Oryza sativaQuercus lobata23.615.3387.580forward
CNT3071230Oryza sativaQuercus suber20.0615.6788.2468forward
CNT30710775Oryza sativaGlycine max41.324.9185140forward
CNT30194493Oryza sativaSecale cereale50.742588.37172forward
CNT30303130Oryza sativaTriticum aestivum20.0621.1289.7168forward
CNT30569495Oryza sativaActinidia chinensis23.614.1383.7580forward
CNT30442485Oryza sativaAegilops tauschii50.7419.8487.21172forward
CNT30254078Oryza sativaAvena sativa50.7427.2688.95172forward
CNT30667711Oryza sativaTriticum dicoccoides20.0610.0389.7168forward
CNT30140197Oryza sativaLolium perenne39.5316.7784.33134forward
CNT3010238Oryza sativaZea mays53.3918.3283.43181forward
CNT30653963Oryza sativaRosa chinensis4116.7182.01139forward
CNT30128639Oryza sativaCorymbia citriodora26.2518.0586.5289forward
CNT30687059Oryza sativaTriticum urartu50.7424.6887.21172forward
CNT30364404Oryza sativaSorghum bicolor20.069.7489.7168forward
CNT30369645Oryza sativaOryza glumipatula54.5736.4999.46185forward
CNT30100563Oryza sativaOryza rufipogon70.525.59100239forward
CNT30575409Oryza sativaOryza barthii32.7417.87100111forward
CNT30175854Oryza sativaVigna angularis20.0620.3688.2468forward
CNT30550616Oryza sativaOryza brachyantha33.0418.7396.43112forward

Expression of CNT30691021

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MTTGLAVLPPRDPTFSMALTTSMPSTTRPNTTCFPSSQLQGTVQMKNWDPLDAGAVVLELEHLVGELLAVDRLPSRAVAAGEVA

Sequence

>CNT30691021
AGGGACTCGACGACTCAAGACGACTGATACTGGCGAAAGGCGAAGGGGAACAGCACAGATCTAGGAGAGCTGGCCGCAGTCGGCGATGACGACCGGCTTG
GCGGTGCTCCCGCCGCGGGATCCCACCTTCTCGATGGCCTTGACGACGTCCATGCCCTCGACGACGCGGCCGAACACGACGTGCTTCCCGTCCAGCCAGC
TGCAGGGCACGGTGCAGATGAAGAACTGGGACCCGTTAGATGCCGGGGCTGTCGTGCTTGAACTTGAACACCTCGTCGGCGAACTTCTCGCCGTAGATCG
ACTCCCCTCCCGTGCCGTTGCCGCGGGTGAAGTCGCCGC