« Back to Nymphaea colorata search


Detailed information on CNT30640893


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 3e-91

BLAST vs NONCODE:
NONMEST001145, E-value = 3e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697228Nymphaea colorataOryza sativa11.9634.0786.11108forward
CNT30677085Nymphaea colorataSetaria viridis18.4932.2483.83167forward
CNT30524148Nymphaea colorataSetaria italica19.1626.2580.35173forward
CNT30536152Nymphaea colorataEucalyptus grandis14.5127.4183.21131reverse complement
CNT30314796Nymphaea colorataCorylus avellana23.9231.4483.8216forward
CNT30518741Nymphaea colorataJuglans regia21.0438.3183.16190forward
CNT30702712Nymphaea colorataQuercus lobata23.3725.2187.2211forward
CNT30377016Nymphaea colorataArabidopsis thaliana9.1922.885.5483forward
CNT30273043Nymphaea colorataChenopodium quinoa25.039.0583.19226forward
CNT30727836Nymphaea colorataCorchorus capsularis17.1741.6786.45155forward
CNT30381342Nymphaea colorataManihot esculenta25.2528.2285.96228forward
CNT30405165Nymphaea colorataBeta vulgaris18.1631.385.37164forward
CNT30526822Nymphaea colorataPhaseolus vulgaris19.2735.0879.89174forward
CNT30200362Nymphaea colorataPisum sativum18.3859.581.33166forward
CNT30710704Nymphaea colorataGlycine max25.0329.0582.74226forward
CNT30295969Nymphaea colorataTriticum aestivum11.9646.7588.89108forward
CNT30392715Nymphaea colorataTriticum turgidum11.9646.7588.89108forward
CNT30586189Nymphaea colorataMusa acuminata20.626.0581.18186forward
CNT30541563Nymphaea colorataBrassica napus18.1624.5983.54164forward
CNT30237267Nymphaea colorataBrassica oleracea18.4920.5983.23167forward
CNT30145300Nymphaea colorataMedicago truncatula7.0929.3687.564forward
CNT30258087Nymphaea colorataAvena sativa23.2644.8781.9210forward
CNT30663719Nymphaea colorataTriticum dicoccoides11.9641.3888.89108forward
CNT3075755Nymphaea colorataBrassica juncea17.1722.7683.23155forward
CNT30263618Nymphaea colorataBrassica rapa18.623.982.14168forward
CNT30139084Nymphaea colorataLolium perenne23.1524.9478.47209forward
CNT306434Nymphaea colorataZea mays18.7267.0682.25169forward
CNT30610790Nymphaea colorataGossypium raimondii20.1659.4886.26182forward
CNT30216367Nymphaea colorataKalanchoe fedtschenkoi15.0637.5783.09136forward
CNT30207455Nymphaea colorataHelianthus annuus23.3731.9281.04211forward
CNT30348318Nymphaea colorataEragrostis tef45.2954.3980.2409forward
CNT30477126Nymphaea colorataArabidopsis halleri9.8622.0385.3989forward
CNT30365786Nymphaea colorataSorghum bicolor19.0566.4183.72172forward
CNT30620107Nymphaea colorataCajanus cajan21.8214.1783.25197forward
CNT30570332Nymphaea colorataVitis vinifera23.735.8584.58214forward
CNT30319836Nymphaea colorataAsparagus officinalis19.4922.0681.25176forward
CNT3037147Nymphaea colorataCucumis melo25.0331.2682.74226forward
CNT30104026Nymphaea colorataOryza rufipogon19.7120.1682.02178forward
CNT30557232Nymphaea colorataPanicum hallii19.626.6281.36177forward

Expression of CNT30640893

Peptides detected in this lncRNA

>peptide 1 (75 aa)
KFNGITVFYIFILHQHCKQYICFKACLDLQRKCEKRNFLSGVLEADIETPDESKVSSTCSIHFFFERERERERVQ*

>peptide 2 (90 aa)
MPWVGTLVHGVQGVSSNLLRGRLVLALCTRGDHARLQEDTLKHDIVLSQIEEDLCPNLLGHFKGPVNAMVTIQQNLWLNNGNQTIVLFVN*

>peptide 3 (29 aa)
MRVRFPLLVASIFSLRERERERECSKAKK*

>peptide 4 (35 aa)
MRTTHAMGWDPGSWRSGCKQQLAQGSPCPCTLHQG*

Sequence

>CNT30640893
AAATTTAATGGGATAACTGTATTTTATATTTTCATTCTTCACCAACACTGTAAACAATATATCTGCTTCAAAGCGTGTTTAGACCTGCAACGCAAGTGTG
AGAAAAGGAATTTCTTATCTGGTGTTTTAGAGGCAGATATAGAGACGCCAGATGAGAGTAAGGTTTCCTCTACTTGTAGCATCCATTTTTTCTTTGAGAG
AGAGAGAGAGAGAGAGAGAGTGCAGTAAAGCAAAAAAATGAAGGGACTAAGCAAATAATAGTAAAAAACAGACTACATGAGTATTTAGTCCCCACTAGGC
TGGAAACGCAAAGAAAAGGGCAATTGTATACACGCTGCATGCACCAAAGCAAGCAGCAGAAGCTACTCCACGGAACAGTAGACTTAAGAACATAGAATTT
TGCTTCAGTAAACATAGCCCTTGACAAACATGCCCTGCTTAGATTCCTCTGACTCTCCCTCACCAGTGTATTTTCCGAGCTGAGCAAGGGAGTTGGCCTT
GGCCCTCAGGAGAAGTGCATCCTGTGCTGCCTTAACATTCTCTGGTCTGCCACCCCATGTTTTGAGGCAAGTGTTCTGGAGGGCTCTTGCATATGAGAAC
GACACATGCCATGGGTTGGGACCCTGGTTCATGGCGTTCAGGGTGTAAGCAGCAACTTGCTCAGGGGTCGCCTTGTCCTTGCACTCTGCACCAGGGGTGA
CCATGCTAGGCTTCAAGAGGATACCCTCAAACATGACATTGTTCTCAGCCAAATAGAAGAAGACCTCTGCCCAAACCTTCTTGGCCACTTCAAAGGTCCT
GTCAATGCCATGGTCACCATCCAACAGAATCTCTGGCTCAACAATGGGAACCAAACCATTGTCCTGTTTGTAAATTAAAAAAAAACCACGAGTTAGAAAA
ACA