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Detailed information on CNT30263618


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697228Brassica rapaOryza sativa16.6436.9182.05117forward
CNT30677085Brassica rapaSetaria viridis32.4344.0278.51228forward
CNT30524487Brassica rapaSetaria italica31.7216.7278.48223forward
CNT30640893Brassica rapaNymphaea colorata23.918.682.14168forward
CNT30314796Brassica rapaCorylus avellana25.3225.9184.27178forward
CNT30518741Brassica rapaJuglans regia33.1446.9882.83233forward
CNT30702712Brassica rapaQuercus lobata20.7717.4486.3146forward
CNT30273043Brassica rapaChenopodium quinoa35.710.0679.28251forward
CNT30405165Brassica rapaBeta vulgaris24.6133.0279.77173forward
CNT30200362Brassica rapaPisum sativum27.3168.8284.9192forward
CNT30710704Brassica rapaGlycine max26.1723.6582.07184forward
CNT30297329Brassica rapaTriticum aestivum16.7950.6481.36118forward
CNT30390800Brassica rapaTriticum turgidum17.2155.2581.82121forward
CNT30586189Brassica rapaMusa acuminata24.1823.8182.35170forward
CNT30258087Brassica rapaAvena sativa30.8746.3779.26217forward
CNT30477126Brassica rapaArabidopsis halleri43.2475.2583.88304forward
CNT30620107Brassica rapaCajanus cajan23.6111.9482.53166forward
CNT30570332Brassica rapaVitis vinifera33.5739.5382.2236forward
CNT30724556Brassica rapaLupinus angustifolius31.8622.782.14224forward

Expression of CNT30263618

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MFSDKCSGEHVRRRRTRAMGILLRRSLRV*

>peptide 2 (85 aa)
MISSTLLSSIGVAFDEHTLLSLFRLAFSGVFSKLSQRVGLGTSQESGLSSVHVLSSASPCFQTSVLESTCVGEGHVPWGFCCGGA*

>peptide 3 (35 aa)
EVKGNGDYFYRIFFKNKIDQDKIDNFNILKLIKKE*

>peptide 4 (36 aa)
MIITTKLKQMQQRHLLRLLSQYHDLFNIVVFNRCSL*

Sequence

>CNT30263618
GAGAGGTGAAAGGTAACGGAGACTATTTCTACAGAATATTTTTCAAGAATAAAATAGATCAAGATAAGATAGATAACTTCAATATATTAAAGCTTATTAA
AAAGGAGTAGCTAATGCAAATTAAGCAGATAATATAAATGATTTGACATGATAATAACAACCAAACTCAAACAAATGCAACAAAGACATTTGCTTCGTCT
CCTTTCACAATATCATGATCTCTTCAACATTGTTGTCTTCAATAGGTGTAGCCTTTGACGAACATACCCTCCTTAGCCTCTTCAGACTCGCCTTCTCCGG
TGTATTTTCCAAGCTGAGCCAACGAGTTGGCCTTGGCACGAGCCAAGAGAGTGGTCTGAGCAGCGTTCACGTTCTCAGCTCTGCCTCCCCATGTTTTCAG
ACAAGTGTTCTGGAGAGCACGTGCGTAGGAGAAGGACACGTGCCATGGGGATTCTGTTGCGGAGGAGCTTAAGGGTGTAGGCGGCAACTTGTTCAGGAGT
AGCTCTGTCTTTAGACTCGGCTCCGGGAGTCACCATGCTCGTCTTCAGGAGGATACCTTCAAACATTACATTGTTCTGAGCAAGGTAAAAGAAAACCTCA
GCCCAAACCTTCTCAGCAACTTCGTAAGTCCTGTCAATGTCGTGTTCTCCGTCCAACAAGATCTCTGGCTCCACAATTGGGACCAATCCACTGTCCTGTA
AAA