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Detailed information on CNT30702712


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST001145, E-value = 1e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677406Quercus lobataSetaria viridis18.1626.7684.21152forward
CNT30640893Quercus lobataNymphaea colorata25.2123.3787.2211forward
CNT30314796Quercus lobataCorylus avellana29.3935.8190.65246forward
CNT30518741Quercus lobataJuglans regia18.431.0592.86154forward
CNT30377016Quercus lobataArabidopsis thaliana10.3923.987.3687forward
CNT30727836Quercus lobataCorchorus capsularis25.8158.0686.11216forward
CNT30381342Quercus lobataManihot esculenta34.1735.487.41286forward
CNT30526822Quercus lobataPhaseolus vulgaris23.4239.5282.65196forward
CNT30200362Quercus lobataPisum sativum18.6455.9188.46156forward
CNT30494492Quercus lobataOlea europaea16.4927.4484.78138forward
CNT30710782Quercus lobataGlycine max17.6822.4291.22148forward
CNT30586190Quercus lobataMusa acuminata14.2246.1287.39119forward
CNT30541563Quercus lobataBrassica napus17.0821.4485.31143forward
CNT30237332Quercus lobataBrassica oleracea12.6644.1783.96106forward
CNT30145300Quercus lobataMedicago truncatula24.4994.0485.37205forward
CNT30258087Quercus lobataAvena sativa16.8530.1382.98141forward
CNT3075914Quercus lobataBrassica juncea14.5820.1385.25122forward
CNT30263618Quercus lobataBrassica rapa17.4420.7786.3146forward
CNT30462400Quercus lobataSaccharum spontaneum25.5715.7282.24214forward
CNT30610723Quercus lobataGossypium raimondii34.5356.0188.24289forward
CNT3068263Quercus lobataLeersia perrieri18.5220.3781.94155forward
CNT30207455Quercus lobataHelianthus annuus33.9342.9779.23284forward
CNT30128108Quercus lobataCorymbia citriodora13.3821.4189.29112forward
CNT30345069Quercus lobataEragrostis tef25.6937.0181.86215forward
CNT30477126Quercus lobataArabidopsis halleri10.3921.5387.3687forward
CNT30365786Quercus lobataSorghum bicolor18.1658.6984.21152forward
CNT30620107Quercus lobataCajanus cajan32.0219.2887.31268forward
CNT30355905Quercus lobataLactuca sativa10.7523.9483.3390forward
CNT30570222Quercus lobataVitis vinifera34.7758.3286.25291forward
CNT3037147Quercus lobataCucumis melo26.8831.1281.33225forward
CNT30334895Quercus lobataCynara cardunculus14.2229.2485.71119forward

Expression of CNT30702712

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MRTTHAMGLKIGSWHSSSRLLQPRIGHQTKTAHYEQITQLVHESSLI*

>peptide 2 (32 aa)
MTLAMIPGTAGGILLWRSLRRIPSNKTLFSAR*

>peptide 3 (59 aa)
PRYKALHIPEKLAFLHPSIIIIIVLCCLFFFYFIIIIYIFRASSLVNVTLDKHSLLGLF*

Sequence

>CNT30702712
CTCCACGCTATAAAGCATTACACATTCCAGAGAAATTAGCATTCCTCCATCCATCCATCATCATCATCATTGTCCTCTGCTGCCTCTTCTTCTTCTACTT
CATCATTATCATCTATATCTTTCGCGCGAGCAGCTTAGTAAACGTAACCCTTGACAAACATTCCCTTCTTGGCCTCTTCTGACTCTCCCTCACCAGTGTA
TTTTCCGAGCTGAGCAAGAGAGTTGGCCTTGGCACGGATAAGCAGTGCCTCCTGAGCTGCCTTGACGTTTTCAGGCCTGCCTCCCCATGTCTTAAGGCAG
GTGTTCTGGAGGGCTCTGGCATATGAGAACGACACATGCCATGGGTTTGAAGATTGGTTCATGGCATTCAAGTTCAAGGTTGCTTCAACCTCGGATTGGC
CACCAGACAAAAACTGCTCATTATGAACAAATTACACAATTAGTACATGAATCATCCTTGATTTAATATAAAGAATTATGGAACTTTATTATTTGTTATG
ACACTTGCCATGATTCCAGGGACAGCTGGGGGGATTCTTCTCTGGAGGAGCTTGAGAAGAATACCCTCAAACAAGACATTGTTCTCAGCAAGGTAGAAGA
AAACCTCAGCCCACACCTTCTGTGCAACTTCAAAAGTCCTCTCAATGCCATGTTCACCATCAAGCAAGATTTCTGGCTCCACAATTGGGACCAACCCATT
GTCCTGCAAGATCAACAGAATTGATCATTAGCATATTAAAATCACTTCCATTGCTTTTGAGTTTCATAAGACTTGATTTTTGCTCAATTTCAACCAGAAG
CACTTCTCAAATGCTAACTGAATATATACAAATCTTT