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Detailed information on CNT30536152


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZU52|ALFP3_ARATH, E-value = 1e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640893Eucalyptus grandisNymphaea colorata27.4114.5183.21131reverse complement
CNT30314796Eucalyptus grandisCorylus avellana20.0813.9784.3896reverse complement
CNT30374484Eucalyptus grandisArabidopsis thaliana38.0842.8282.42182reverse complement
CNT30269395Eucalyptus grandisChenopodium quinoa38.915.9981.18186reverse complement
CNT3019571Eucalyptus grandisCitrullus lanatus31.1714.7583.22149reverse complement
CNT30381342Eucalyptus grandisManihot esculenta22.1813.1283.96106reverse complement
CNT30542943Eucalyptus grandisBrassica napus39.9641.1680.1191reverse complement
CNT30610790Eucalyptus grandisGossypium raimondii20.2931.783.5197reverse complement
CNT30570331Eucalyptus grandisVitis vinifera20.9216.9582100reverse complement

Expression of CNT30536152

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MVTSGAEHKKKASPKTISKYSYNVEKESSICCSKNHGMFMLTFIHL

>peptide 2 (60 aa)
MLPSLRIMALCPLLNLRFFLMETTLLRGLLKWQRRFGLRSFSIWLRTMFCLRVSCLNPAW*

>peptide 3 (34 aa)
KGLVPLLGSNNESWCQGLDGLASRSAKYYKQGGQ*

>peptide 4 (35 aa)
RVWFLFLDPIMNPGAKAWMDWLQGPLNTTSKEDSS*

Sequence

>CNT30536152
AAGGGTTTGGTTCCTCTTCTTGGATCCAATAATGAATCCTGGTGCCAAGGCTTGGATGGATTGGCTTCAAGGTCCGCTAAATACTACAAGCAAGGAGGAC
AGTAGTTAGCATTCCTTGTGGTCCCTCTTGCAGTAAAAGAAGCTGCATGGGGACTTGCACGATATGCTGCCATCTCTCAGGATAATGGCCTTGTGCCCAT
TGTTGAACCTGAGATTCTTCTTGATGGAGACCACCCTATTGAGAGGACTCTTAAAGTGGCAGAGAAGGTTTGGTCTGAGGTCTTTTTCTATTTGGTTGAG
AACAATGTTTTGTTTGAGGGTATCCTGCTTAAACCCAGCATGGTAACTTCTGGAGCTGAGCATAAGAAGAAGGCTTCTCCTAAGACAATTTCCAAGTACT
CTTACAATGTTGAGAAGGAGAGTTCCATCTGCTGTTCCAAGAATCATGGTATGTTTATGTTAACATTTATACATCTTT