Detailed information on CNT30365786


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 1e-43

BLAST vs NONCODE:
NONMEST001145, E-value = 3e-15

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640893Sorghum bicolorNymphaea colorata66.4119.0583.72172forward
CNT30702712Sorghum bicolorQuercus lobata58.6918.1684.21152forward
CNT30727836Sorghum bicolorCorchorus capsularis59.4641.482.47154forward
CNT30710712Sorghum bicolorGlycine max37.0717.3985.4296forward
CNT30538163Sorghum bicolorBrassica napus71.4337.5381.08185forward
CNT30237267Sorghum bicolorBrassica oleracea71.4322.8180.54185forward
CNT30439071Sorghum bicolorAegilops tauschii32.4325.1588.184forward
CNT30255936Sorghum bicolorAvena sativa55.9839.484.14145forward
CNT3075914Sorghum bicolorBrassica juncea63.7127.2381.21165forward
CNT30263633Sorghum bicolorBrassica rapa33.214.3883.7286forward
CNT307142Sorghum bicolorZea mays47.499.8292.68123forward
CNT30610723Sorghum bicolorGossypium raimondii45.9523.0683.19119forward
CNT30217689Sorghum bicolorKalanchoe fedtschenkoi27.4123.6787.3271forward
CNT30207455Sorghum bicolorHelianthus annuus40.1515.7382.69104forward
CNT30684371Sorghum bicolorTriticum urartu48.2634.0688125forward
CNT30479625Sorghum bicolorArabidopsis halleri38.2229.9182.8399forward
CNT30570222Sorghum bicolorVitis vinifera68.7335.6783.15178forward
CNT30319836Sorghum bicolorAsparagus officinalis47.115.2985.25122forward
CNT30725414Sorghum bicolorLupinus angustifolius42.4712.3582.73110forward

Expression of CNT30365786

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MPSLAAAASPSPVYLPSCARELALARSSSASCAAFTFSGLPPHVLRQVFCSALA*

>peptide 2 (65 aa)
LVVLVLDEHALLGGSGLTIAGVLAELCQGIGLGAQQQRVLCCLHVLRPASPCLEAGVLQRPSVGE*

Sequence

>CNT30365786
ATTAGTAGTTCTAGTTCTTGACGAACATGCCCTCCTTGGCGGCAGCGGCCTCACCATCGCCGGTGTACTTGCCGAGCTGTGCCAGGGAATTGGCCTTGGC
GCGCAGCAGCAGCGCGTCCTGTGCTGCCTTCACGTTCTCAGGCCTGCCTCCCCATGTCTTGAGGCAGGTGTTCTGCAGCGCCCTAGCGTAGGAGAATGAC
ACATGCCACGGGTTGGGGCTCTGGTTCATGGCGTGAAAGATGAGATCAGGTGCTACCCT