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Detailed information on CNT30620107


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677406Cajanus cajanSetaria viridis11.0126.9483.66153forward
CNT30640893Cajanus cajanNymphaea colorata14.1721.8283.25197forward
CNT30314796Cajanus cajanCorylus avellana12.2324.7592.35170forward
CNT30518741Cajanus cajanJuglans regia11.833.0689.63164forward
CNT30702712Cajanus cajanQuercus lobata19.2832.0287.31268forward
CNT30727836Cajanus cajanCorchorus capsularis15.5458.0687.5216forward
CNT30381342Cajanus cajanManihot esculenta18.231.3183.79253forward
CNT30526822Cajanus cajanPhaseolus vulgaris31.4488.188.1437forward
CNT30632098Cajanus cajanVigna unguiculata11.1520.8392.9155forward
CNT30200362Cajanus cajanPisum sativum12.4562.0191.33173forward
CNT30494492Cajanus cajanOlea europaea10.7929.8284.67150forward
CNT30710712Cajanus cajanGlycine max30.7277.3691.1427forward
CNT30586189Cajanus cajanMusa acuminata11.9423.2580.12166forward
CNT30541563Cajanus cajanBrassica napus11.824.5982.93164forward
CNT30237267Cajanus cajanBrassica oleracea11.9420.4783.13166forward
CNT30145300Cajanus cajanMedicago truncatula14.6893.5890.2204forward
CNT30258087Cajanus cajanAvena sativa11.8735.2679.39165forward
CNT3075914Cajanus cajanBrassica juncea10.2923.683.22143forward
CNT30263618Cajanus cajanBrassica rapa11.9423.6182.53166forward
CNT30610723Cajanus cajanGossypium raimondii18.565086.82258forward
CNT30216367Cajanus cajanKalanchoe fedtschenkoi5.6121.5584.6278forward
CNT30207455Cajanus cajanHelianthus annuus12.4526.1784.39173forward
CNT30128108Cajanus cajanCorymbia citriodora7.5520.0888.57105forward
CNT30345069Cajanus cajanEragrostis tef18.4944.2380.54257forward
CNT30479625Cajanus cajanArabidopsis halleri6.8328.785.2695forward
CNT30481517Cajanus cajanChara braunii7.6335.184.91106forward
CNT30570222Cajanus cajanVitis vinifera18.2750.982.68254forward
CNT3037147Cajanus cajanCucumis melo15.930.5784.62221forward
CNT30150970Cajanus cajanBrachypodium distachyon7.1941.4982100forward
CNT30334895Cajanus cajanCynara cardunculus10.0734.485140forward
CNT30725414Cajanus cajanLupinus angustifolius26.9842.0984.27375forward

Expression of CNT30620107

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSSRQCSGVLWHMRTTRAMGSEIGSWHSN*

>peptide 2 (33 aa)
MAFKLRVASTSDCPPDKNCITQLWLAHEGKLSS*

>peptide 3 (56 aa)
MKGSYQVSNANNDAFGGVTYHDSRDSRRNSPVKELEGVTMLGLRRIPSKRTLFSAR*

>peptide 4 (55 aa)
EIQFNQFVKYIETYSSTRFLIAKGLLSCKGACNHKQKVSKTIKHYILDKLVFSST*

>peptide 5 (33 aa)
MDLYDEKMSMTCSTKKGGHDIMNDFAATTKGEHS

Sequence

>CNT30620107
CCGAGATTCAGTTCAACCAGTTTGTTAAATATATTGAAACATATTCAAGTACACGATTCCTCATAGCAAAAGGTTTATTAAGTTGTAAAGGTGCATGTAA
CCATAAACAAAAAGTCTCCAAGACTATAAAACATTACATTTTAGACAAATTAGTCTTTTCTTCCACTTGATCCTCCGCCAACACCTACTGTAACTGCTGG
TGTTGCTGCCTAACATGTATCATATTCACTACAAACATCATCTTAATAGGAGTATCCTTTGACAAACAACTCCTTCTTGGCTTCCTCAGACTCACCCTCA
CCAGTGTACTTCCCAAGCTGAGCAAGGGAGTTGGACTTGGCACGGAAAAGGAGTGCATCTTGCGCCGCCTTCACGTTCTCTGGACGGCCTCCCCATGTCT
TCAAGGCAGTGTTCTGGAGTGCTCTGGCATATGAGAACGACACGTGCCATGGGTTCGGAGATTGGTTCATGGCATTCAAATTGAGGGTTGCTTCAACCTC
AGATTGTCCACCAGACAAAAACTGCATAACACAACTTTGGTTAGCACATGAAGGGAAGTTATCAAGTTAGTAATGCAAACAATGATGCATTTGGAGGTGT
CACTTACCATGATTCCAGGGACAGCAGGAGGAATTCTCCTGTGAAGGAGCTTGAGGGTGTAACCATGCTAGGCTTAAGGAGAATACCCTCAAAAAGGACA
TTGTTCTCAGCAAGGTAGAAGAAAACCTCTGCCCACACCTTTTGGGCTACTTCAAAAGTCCTATCAATAACATGCTCCCCATCAAGCAAGATCTCTGGCT
CCACAATTGGGACCAACCCATTGTCCTAAAACATTGAATGGAAACATTCTAGCCCTTCAGAAATGTAAAGAAAAAAGTATCCTATCTCACATTTATAAAT
AGAATAACTGTAACATAAAATGTAAAAAAATACTTTACAATGTTAGTGCATCACTATTAAATCTAAAAAAGAAAATAGGTAATGCACTGACTGAACAAAT
TAGTTTTACACTATTATCTAATCACAAATCACTATTTATGATAAGTTGTTGACTTTTATAATAAGTAAAAAATTGTACCAATGATAATATATGATTAAAG
CTATTTTATACTGTCAATGCATGACCATTAAACTCAAATGAAAGTACTAATAATCTAATATAACTTGAGTGGTTTTTCTCACCTGAGCAATTGCAGCATA
GCGAGCCAGACCCCAGGCTGCTTCCTTAACTGCTAGAGCAGAGGGACCATTGGGGATGCTCACAACAGTACGCCTAATGTGGAATTATGGATTTATATGA
TGAAAAAATGAGCATGACATGCAGCACAAAAAAAGGAGGCCACGATATTATGAATGATTTTGCTGCCACAACAAAGGGAGAACACTCACC