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Detailed information on CNT30541563


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJU4|ALFP1_ARATH, E-value = 1e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697376Brassica napusOryza sativa26.6913.5879.78178forward
CNT30676912Brassica napusSetaria viridis37.185082.66248forward
CNT30524487Brassica napusSetaria italica25.9412.9780.35173forward
CNT30640893Brassica napusNymphaea colorata24.5918.1683.54164forward
CNT30314796Brassica napusCorylus avellana57.8756.1979.53386forward
CNT30518741Brassica napusJuglans regia34.9346.9881.97233forward
CNT30702712Brassica napusQuercus lobata21.4417.0885.31143forward
CNT30381342Brassica napusManihot esculenta24.2920.0583.33162forward
CNT30405165Brassica napusBeta vulgaris17.2421.9582.61115forward
CNT30200362Brassica napusPisum sativum28.4968.183.68190forward
CNT30710704Brassica napusGlycine max27.2923.3981.87182forward
CNT30297329Brassica napusTriticum aestivum17.6950.6483.05118forward
CNT30390800Brassica napusTriticum turgidum18.1455.2583.47121forward
CNT30586189Brassica napusMusa acuminata25.0423.3982.04167forward
CNT30439071Brassica napusAegilops tauschii11.6923.3591.0378forward
CNT30258087Brassica napusAvena sativa32.0845.7380.37214forward
CNT30663719Brassica napusTriticum dicoccoides17.6945.2182.2118forward
CNT3075755Brassica napusBrassica juncea99.797.6599.25665forward
CNT30610790Brassica napusGossypium raimondii25.0454.5883.83167forward
CNT30217689Brassica napusKalanchoe fedtschenkoi10.1922.6788.2468forward
CNT30207455Brassica napusHelianthus annuus20.9921.1881.43140forward
CNT30128108Brassica napusCorymbia citriodora17.8422.7583.19119forward
CNT30477126Brassica napusArabidopsis halleri45.1374.587.04301forward
CNT30620107Brassica napusCajanus cajan24.5911.882.93164forward
CNT30570332Brassica napusVitis vinifera39.4344.0581.75263forward
CNT3037127Brassica napusCucumis melo26.3932.6580.11176forward
CNT30104230Brassica napusOryza rufipogon21.295.7780.99142forward
CNT30117905Brassica napusOryza nivara26.6915.4179.78178forward
CNT30334895Brassica napusCynara cardunculus15.5925.5586.54104forward
CNT30725414Brassica napusLupinus angustifolius25.0418.7484.43167forward

Expression of CNT30541563

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MFSGKCSEEHVRRRRTRATGLVPGSSRSGTAGGILLRRSLRV*

Sequence

>CNT30541563
TAGATAACTTCAATATATTACAAACTTATTAAAAGGAGTAGCTAATGCAAATTCAGCAGAGAAAATAAGTGATTTGACATGATAATAACAACCATACTCG
AAAACAAATGTAATTAAAACACTTGCTTCATCTCCTTTCACAGCATCTTCACCTCTTCAACATTGTTGTCTTCAGTAGGTGTAGCCTTTGACGAACATAC
CCTCCTTAGCCTCTTCAGACTCACCTTCTCCGGTGTATTTTCCGAGCTGAGCCAACGAATTGGCCTTGGCTCGAGTCAAGAGAGTGGTCTGAGCTGCGTT
CACGTTCTCAGCTCTGCCTCCCCATGTTTTCAGGCAAGTGTTCTGAAGAGCACGTGCGTAGGAGAAGGACACGTGCCACGGGTTTGGTGCCTGGTTCATC
GCGTTCAGGGACGGCAGGAGGGATTCTGTTGCGGAGGAGCTTAAGGGTGTAGGAGGCAACTTGTTCAGGAGTAGCTCTGTCTTTAGACTCGGCTCCTGGA
GTCACCATGCTCGGCTTCAGGAGGATACCTTCAAACATGACATTGTTCTGAGCTAGGTAAAAGAAAACCTCAGCCCACACCTTCTCTGCTACTTCGTAAG
TCCTGTCAATGTCGTGTTCTCCATCCAACAAGATCTCTGGCTCCACTATGGGAACCAATCCACTGTC