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Detailed information on CNT3075755


BLAST search results

BLAST vs Swiss-Prot:
sp|Q944G9|ALFP2_ARATH, E-value = 2e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697376Brassica junceaOryza sativa26.1413.5879.78178forward
CNT30676912Brassica junceaSetaria viridis36.425082.66248forward
CNT30524487Brassica junceaSetaria italica25.412.9780.35173forward
CNT30640893Brassica junceaNymphaea colorata22.7617.1783.23155forward
CNT30314796Brassica junceaCorylus avellana48.3147.8980.24329forward
CNT30518741Brassica junceaJuglans regia22.0330.2486150forward
CNT30381342Brassica junceaManihot esculenta23.7920.0582.72162forward
CNT30405165Brassica junceaBeta vulgaris16.8921.9582.61115forward
CNT30200362Brassica junceaPisum sativum27.1766.3183.24185forward
CNT30297329Brassica junceaTriticum aestivum17.3350.6483.05118forward
CNT30223439Brassica junceaHordeum vulgare14.8324.2282.18101forward
CNT30390800Brassica junceaTriticum turgidum17.7755.2583.47121forward
CNT30541563Brassica junceaBrassica napus97.6599.799.25665forward
CNT30663719Brassica junceaTriticum dicoccoides17.3345.2182.2118forward
CNT30128108Brassica junceaCorymbia citriodora17.4722.7583.19119forward
CNT30570332Brassica junceaVitis vinifera26.5830.3285.08181forward
CNT30319836Brassica junceaAsparagus officinalis22.7619.4281.94155forward
CNT3037127Brassica junceaCucumis melo25.1131.7380.12171forward
CNT30104230Brassica junceaOryza rufipogon20.855.7780.99142forward
CNT30117905Brassica junceaOryza nivara26.1415.4179.78178forward
CNT30725414Brassica junceaLupinus angustifolius24.5218.7483.83167forward

Expression of CNT3075755

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MFSGKCSEEHVRRRRTRATGLVPGSSRSGTAGGILLRRSLRV*

Sequence

>CNT3075755
AAATGATCAAAGATAGTAGATAACTTCAATATATTAAAAACTTATTAAAAGGAGTAGCTAATGCAAATTCAGCAGAGAAAATAAGTGATTTGACATGATA
ATAACAACCATACTCGAAAACAAATGTAATTAAAACACTTGCTTCATCTCCTTTCACAGCATCTTCACCTCTTCAACATTGTTGTCTTCAGTAGGTGTAG
CCTTTGACGAACATACCCTCCTTAGCCTCTTCAGACTCACCTTCTCCGGTGTATTTTCCGAGCTGAGCCAACGAATTGGCCTTGGCTCGAGTCAAGAGAG
TGGTCTGAGCTGCGTTCACGTTCTCAGCTCTGCCTCCCCATGTTTTCAGGCAAGTGTTCTGAAGAGCACGTGCGTAGGAGAAGGACACGTGCCACGGGTT
TGGTGCCTGGTTCATCGCGTTCAGGGACGGCAGGAGGGATTCTGTTGCGGAGGAGCTTAAGGGTGTAGGAGGCAACTTGTTCAGGAGTAGCTCTGTCTTT
AGACTCGGCTCCTGGAGTCACCATGCTCGGCTTCAGGAGGATACCTTCAAACATGACATTGTTCTGAGCAAGGTAAAAGAAAACCTCAGCCCACACCTTC
TCAGCTACTTCGTAAGTCCTGTCAATGTCGTGTTCTCCGTCCAACAATATCTCTGGCTCCACTATGGGAACCAATCCACTG