Detailed information on CNT30524148


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 7e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697243Setaria italicaOryza sativa24.8912.7493.9164forward
CNT30640893Setaria italicaNymphaea colorata26.2519.1680.35173forward
CNT30223084Setaria italicaHordeum vulgare23.2219.6289.54153forward
CNT30588905Setaria italicaMusa acuminata20.3351.9482.09134forward
CNT3068263Setaria italicaLeersia perrieri25.0421.6894.55165forward
CNT30684371Setaria italicaTriticum urartu19.1234.3393.65126forward
CNT30367530Setaria italicaSorghum bicolor27.4753.2495.03181forward
CNT30371242Setaria italicaOryza glumipatula24.8925.0493.9164forward
CNT30150970Setaria italicaBrachypodium distachyon25.870.5488.24170forward
CNT30582099Setaria italicaEchinochloa crusgalli25.6431.3592.9169forward

Expression of CNT30524148

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MALRNMMPGTEGGMRRWRSFRVYSATCSGVARSLASAPGVTMDGLSRMPSNMTLFS

>peptide 2 (29 aa)
EGSFYAHSTIYAKYSIDQLHNLISLIHIV*

>peptide 3 (54 aa)
MPSLASAASPSEVYLPSCASELALARSSSASCAALTFSGTPPHVLRQVFCSARA*

Sequence

>CNT30524148
GGAAGGATCATTTTATGCCCATTCAACAATCTATGCAAAATACTCGATCGATCAACTTCATAATTTAATTTCTCTTATACATATAGTATAGCATTACCAT
GCCTCAAGCTTGCATCTCAATGGCGAGCTCGATCTTTGCAGTAGCTAGCAGTAGTAACTAACGGCACGCACAAAGCATCGATGAGCACCATGCATGGATC
ATCACAGCGAAGACGTGCTTAGCTTGCGTAACCAGTATGTATCGTCGGAGTAGCTAGCCGATGAATTAGTAGCTGTAGTTCTTGACGAACATGCCCTCCT
TGGCCTCGGCGGCCTCGCCGTCGGAGGTGTACTTGCCGAGCTGCGCCAGCGAGTTGGCCTTGGCGCGCAGCAGCAGCGCGTCCTGCGCCGCCTTGACGTT
CTCCGGCACGCCGCCCCACGTCTTGAGGCAGGTGTTCTGCAGCGCCCGCGCGTAGGAGAAGGACACGTGCCACGGGTTGGGCCCCTGGTTCATGGCGTTG
AGGAACATGATGCCGGGGACGGAGGGCGGGATGCGGCGGTGGAGGAGCTTCAGGGTGTACTCGGCGACCTGCTCCGGCGTGGCCCGGTCCTTAGCCTCGG
CGCCCGGCGTCACCATGGATGGCTTGAGCAGGATGCCCTCGAACATGACGTTGTTCTCC