« Back to Manihot esculenta search


Detailed information on CNT30381342


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 1e-96

BLAST vs NONCODE:
NONMEST001145, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697376Manihot esculentaOryza sativa23.5114.4982.11190forward
CNT30676912Manihot esculentaSetaria viridis19.3131.4585.26156forward
CNT30524157Manihot esculentaSetaria italica22.414.8580.11181forward
CNT30640893Manihot esculentaNymphaea colorata28.2225.2585.96228forward
CNT30536152Manihot esculentaEucalyptus grandis13.1222.1883.96106reverse complement
CNT30314796Manihot esculentaCorylus avellana24.0128.2489.18194forward
CNT30518741Manihot esculentaJuglans regia25.1240.9387.68203forward
CNT30702712Manihot esculentaQuercus lobata35.434.1787.41286forward
CNT30727836Manihot esculentaCorchorus capsularis27.158.8786.76219forward
CNT30405165Manihot esculentaBeta vulgaris21.0432.4484.12170forward
CNT30223861Manihot esculentaHordeum vulgare15.3521.8381.45124forward
CNT30390800Manihot esculentaTriticum turgidum18.3267.5882.43148forward
CNT30541563Manihot esculentaBrassica napus20.0524.2983.33162forward
CNT30237226Manihot esculentaBrassica oleracea14.8526.4985.83120forward
CNT30145300Manihot esculentaMedicago truncatula12.8747.7191.35104forward
CNT30439071Manihot esculentaAegilops tauschii11.5127.8483.8793forward
CNT30662744Manihot esculentaTriticum dicoccoides16.2124.5381.68131forward
CNT3075755Manihot esculentaBrassica juncea20.0523.7982.72162forward
CNT30462400Manihot esculentaSaccharum spontaneum28.3416.8381.66229forward
CNT307142Manihot esculentaZea mays20.9213.581.07169forward
CNT30610723Manihot esculentaGossypium raimondii35.6455.8188.19288forward
CNT30128108Manihot esculentaCorymbia citriodora23.0235.5684.41186forward
CNT30345066Manihot esculentaEragrostis tef27.640.482.06223forward
CNT30365623Manihot esculentaSorghum bicolor26.9819.5382.11218forward
CNT30620107Manihot esculentaCajanus cajan31.3118.283.79253forward
CNT30570222Manihot esculentaVitis vinifera35.457.3186.01286forward
CNT3037147Manihot esculentaCucumis melo28.0931.481.94227forward
CNT30104026Manihot esculentaOryza rufipogon23.5121.5282.11190forward
CNT30117905Manihot esculentaOryza nivara23.5116.4582.11190forward
CNT30557232Manihot esculentaPanicum hallii22.1526.9279.89179forward

Expression of CNT30381342

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MRRTHAMGLDLGSWRSGSRLLQPQIVHQTRTAPSNCSPSIVHNLIFAK*

>peptide 2 (39 aa)
MPWVWTLVHGVQVQGCFNLRLSTRQELHHQIVHRQSYIT*

>peptide 3 (29 aa)
MAFRFKVASTSDCPPDKNCTIKLFTVNRT*

Sequence

>CNT30381342
CATGTTATAACAAAGAACAAAAATAGTCTGCAAGGCTATAAAGCATTTTAACACACAGTGAGAAATTAATCTTGCATTTGATTTCTCCTTCAACCTTCAT
TCTGTAGCTTAGTACACGTAGCCCTTGACGAACATTCCTTTCTTGGCTTCCTCTGATTCTCCTTCGCCGGTGTACTTGCCAAGCTGAGCAAGTGAGTTGG
CCTTGGCACGGATAAGAAGTGCCTCCTGAGCAGCCTGGACATTCTCAGGTCTGCCAGCCCAGGTCTTGAGGCAAGTGTTCTGGAGAGCTCTTGCATATGA
GAAGGACACATGCCATGGGTTTGGACCTTGGTTCATGGCGTTCAGGTTCAAGGTTGCTTCAACCTCAGATTGTCCACCAGACAAGAACTGCACCATCAAA
TTGTTCACCGTCAATCGTACATAACTTAATTTTTGCGAAATGAACGGAGCCTAGATAAATAAAAGGAGACAGGCACTTGCCATGATTCCGGGAACGGCTG
GGGGGATTCTCCTCTTGAGGAGATTGAGGGTGTAGTCTGCAACCTGCTGAGGAGTGGCCCTGTCTTTGCATTCAGCTCCAGGAGTAACCATGCTAGGCTT
GAGAAGAATACCCTCAAACATGACATTGTTCTCAGCCAAGTAGAAGAAAACCTCAGCCCAGACCTTCTGTGCTACTTCAAATGTCCTATCAATGCCATTT
TTTTTTTCTTTCTTCCTTTCTTGGCTCTGCTCTGCTGCTAGCTTTTGCTTGAGAAGATAGAGGCCTTAAAAATACTCTACAATCTTATCTGCTATTCTTC
TAAGTTAG