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Detailed information on CNT30314796


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 9e-81

BLAST vs NONCODE:
NONMEST001145, E-value = 6e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697376Corylus avellanaOryza sativa38.2820.0682.51263forward
CNT30676912Corylus avellanaSetaria viridis34.547.7884.39237forward
CNT30524487Corylus avellanaSetaria italica34.7917.9284.52239forward
CNT30640893Corylus avellanaNymphaea colorata31.4423.9283.8216forward
CNT30536152Corylus avellanaEucalyptus grandis13.9720.0884.3896reverse complement
CNT30518741Corylus avellanaJuglans regia36.5450.693.23251forward
CNT30702712Corylus avellanaQuercus lobata35.8129.3990.65246forward
CNT30273043Corylus avellanaChenopodium quinoa36.9710.1887.01254forward
CNT30727836Corylus avellanaCorchorus capsularis25.7647.5884.18177forward
CNT30381342Corylus avellanaManihot esculenta28.9724.6388.94199forward
CNT30405165Corylus avellanaBeta vulgaris19.9426.1587.59137forward
CNT30200362Corylus avellanaPisum sativum26.4965.2389.56182forward
CNT30710572Corylus avellanaGlycine max38.1458.6187.4262forward
CNT30297329Corylus avellanaTriticum aestivum19.5157.5183.58134forward
CNT30223861Corylus avellanaHordeum vulgare17.4721.1384.17120forward
CNT30390800Corylus avellanaTriticum turgidum19.2160.2784.85132forward
CNT30586189Corylus avellanaMusa acuminata47.1645.3881.48324forward
CNT30541563Corylus avellanaBrassica napus56.1957.8779.53386forward
CNT30237267Corylus avellanaBrassica oleracea25.9121.9583.71178forward
CNT30145300Corylus avellanaMedicago truncatula22.2770.1883.01153forward
CNT30439071Corylus avellanaAegilops tauschii15.4331.7487.74106forward
CNT30258087Corylus avellanaAvena sativa36.8354.0680.63253forward
CNT30662744Corylus avellanaTriticum dicoccoides25.1832.482.66173forward
CNT3075755Corylus avellanaBrassica juncea47.8948.3180.24329forward
CNT30263618Corylus avellanaBrassica rapa25.9125.3284.27178forward
CNT30139084Corylus avellanaLolium perenne20.9617.1884.03144forward
CNT30610790Corylus avellanaGossypium raimondii35.0878.7690.04241forward
CNT30216367Corylus avellanaKalanchoe fedtschenkoi14.8528.1885.29102forward
CNT3068263Corylus avellanaLeersia perrieri22.7120.582.69156forward
CNT30207455Corylus avellanaHelianthus annuus28.8229.9581.82198forward
CNT30128108Corylus avellanaCorymbia citriodora25.0432.8984.88172forward
CNT30684371Corylus avellanaTriticum urartu12.5223.4388.3786forward
CNT30345065Corylus avellanaEragrostis tef36.2450.9282.33249forward
CNT30479625Corylus avellanaArabidopsis halleri14.730.5184.16101forward
CNT30365623Corylus avellanaSorghum bicolor32.6120.0782.14224forward
CNT30620107Corylus avellanaCajanus cajan24.7512.2392.35170forward
CNT30371242Corylus avellanaOryza glumipatula23.1424.2780.5159forward
CNT30570332Corylus avellanaVitis vinifera38.2844.0585.93263forward
CNT30319836Corylus avellanaAsparagus officinalis27.2223.4381.28187forward
CNT3037127Corylus avellanaCucumis melo26.233.482.22180forward
CNT30150970Corylus avellanaBrachypodium distachyon16.1646.0682.88111forward
CNT30104026Corylus avellanaOryza rufipogon31.324.3583.72215forward
CNT30117905Corylus avellanaOryza nivara38.1422.6882.44262forward
CNT30595262Corylus avellanaEragrostis curvula31.8830.3380.82219forward
CNT30604735Corylus avellanaOryza punctata21.6917.6781.21149forward
CNT30557232Corylus avellanaPanicum hallii25.4726.3283.43175forward
CNT30334895Corylus avellanaCynara cardunculus33.0455.7784.14227forward
CNT30725414Corylus avellanaLupinus angustifolius27.6621.3290.53190forward

Expression of CNT30314796

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLKVLPLLLDTEFAFGFAPWQPKAFVKKSNAIK*

>peptide 2 (31 aa)
MPFLASSDSPSPVYFPSWARELALARIRSAS*

Sequence

>CNT30314796
CTTAGTAAACGTAGCCCTTGACGAACATGCCTTTCTTGGCCTCTTCTGACTCTCCCTCACCAGTGTACTTTCCAAGCTGGGCAAGAGAGTTGGCCTTAGC
GCGGATAAGAAGTGCCTCCTGAGCCGCCTTGACGTTCTCCGGCCTGCCTCCCCACGTCTTAAGGCAGGTGTTCTGGAGGGCTCTGGCGTAGGAGAAAGAC
ACGTGCCACGGGTTCGGAGATTGGTTCATGGCGTTCAAATTCAAGGGACAGCAGGGGGGATTCTTCTGTGGAGGAGCTTGAGTGTGTAGTCAGCAACCTG
CTGAGGGGTGGCCCTTTCCTTGCATTCAGCTCCAGGAGTAACCATGCTAGGCTTGAGGAGGATACCCTCAAACAGGACATTGTTCTCAGCAAGGTAGAAG
AAAACCTCAGACCACACCTTCAGGGCAACTTCAAAAGTCCTGTCAATTCCATGCTCACCATCAAGCAAGATTTCTGGCTCCACAATTGGGACCAACCCAT
TGTCCTACAAGTTCAACAGAATTCATTACCATGTTAAAAGTACTTCCATTGCTCTTAGATACAGAGTTTGCCTTTGGTTTTGCTCCATGGCAACCAAAAG
CATTTGTCAAAAAGAGTAATGCTATTAAGTAGACTATTATACGACTGTCATACAACTTGATGATGTGATAATGAAAATCAATTATTA