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Detailed information on CNT30395161


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Triticum turgidumOryza sativa2522.3197.7589forward
CNT30523531Triticum turgidumSetaria italica21.6311.2293.5177forward
CNT30318276Triticum turgidumCorylus avellana21.917.5793.5978forward
CNT30549981Triticum turgidumIpomoea triloba21.9116.2291.0378forward
CNT30517219Triticum turgidumJuglans regia21.914.293.5978forward
CNT30500546Triticum turgidumCoffea canephora22.1917.0692.4179forward
CNT30199009Triticum turgidumPisum sativum23.3115.6391.5783forward
CNT30494259Triticum turgidumOlea europaea21.9115.4893.5978forward
CNT30503465Triticum turgidumNicotiana attenuata21.9115.0393.5978forward
CNT30708369Triticum turgidumGlycine max23.0313.693.982forward
CNT30564366Triticum turgidumActinidia chinensis21.9113.4591.0378forward
CNT30544307Triticum turgidumBrassica napus22.4716.191.2580forward
CNT3060340Triticum turgidumArabidopsis lyrata21.9115.8592.3178forward
CNT3078393Triticum turgidumBrassica juncea22.4718.3191.2580forward
CNT30261673Triticum turgidumBrassica rapa21.917.1289.7478forward
CNT30601041Triticum turgidumFraxinus excelsior21.9113.9892.3178forward
CNT30136282Triticum turgidumLolium perenne25.8416.6797.8392forward
CNT30219096Triticum turgidumKalanchoe fedtschenkoi23.623.9394.0584forward
CNT30207458Triticum turgidumHelianthus annuus21.6313.8593.5177forward
CNT30127630Triticum turgidumCorymbia citriodora22.1917.6793.6779forward
CNT30713631Triticum turgidumMalus domestica golden23.3115.993.9883forward
CNT30626608Triticum turgidumDaucus carota21.919.1892.3178forward
CNT30341608Triticum turgidumEragrostis tef25.8414.6797.8392forward
CNT30596688Triticum turgidumOryza meridionalis22.1914.6693.6779forward
CNT30355299Triticum turgidumLactuca sativa21.6311.0890.9177forward
CNT30642554Triticum turgidumCannabis sativa21.9113.5292.3178forward
CNT3032717Triticum turgidumTheobroma cacao23.039.3892.6882forward
CNT3057178Triticum turgidumAmborella trichopoda21.9113.5294.8778reverse complement
CNT30326905Triticum turgidumAsparagus officinalis21.9117.7797.4478forward
CNT30604511Triticum turgidumOryza punctata23.0315.7493.982forward
CNT30551345Triticum turgidumOryza brachyantha23.61595.2484forward
CNT30725701Triticum turgidumLupinus angustifolius21.914.7393.5978forward
CNT3050740Triticum turgidumCucumis sativus21.9111.8292.3178forward

Expression of CNT30395161

Peptides detected in this lncRNA

>peptide 1 (68 aa)
EIGFVHTLPPPPPPRTGERGRHRRRDEGQVEEEEDEEAQEEAPKDEAAIQVGERGESLTLYHCTSLLG*

>peptide 2 (51 aa)
RRSGSSTHSRRHHRREPESEADTAAAMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30395161
CGGAGATCGGGTTCGTCCACACACTCCCGCCGCCACCACCGCCGCGAACCGGAGAGCGAGGCCGACACCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGA
AGAGGATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCAAGTAGGTGAACGAGGAGAAAGCTTAACCTTGTATCACTGCACCAGTCTG
TTGGGATGATAGGGTCTTTTGGTTCCTGATATGTCTGGGTTGTTGTGATATTTGGGGGATGCCAACCCTTGTAACATGAGGATAATTATATGCTTTCCTT
CCAAGGCTGGATATTTGGCTTAAGAAATATTATCGTCTATTTTTGATCTGTTGCCC