Detailed information on CNT30243105


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Avena sativaOryza sativa15.3222.3198.8889forward
CNT30132841Avena sativaLolium perenne77.2886.3591.54449forward
CNT30219096Avena sativaKalanchoe fedtschenkoi14.4623.9395.2484forward
CNT30581427Avena sativaEchinochloa crusgalli14.820.6796.5186forward
CNT30499286Avena sativaDigitaria exilis14.820.4895.3586forward

Expression of CNT30243105

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MSPACFCFLAAVGCSVLIEFSSVLNLVLASRKTYPSGLYL*

>peptide 2 (44 aa)
MPSKSPFSKSVCVKALNLLPGSRVSFHIAGVTRLLLLHVEDQEKI

>peptide 3 (52 aa)
TGPPVIPVRVCPSSPYIKPGREQPPPHIRFSLFQQPPPYEAAARRRPPPPPR*

>peptide 4 (59 aa)
MKTGVLQYFLAISNNAIKIAFLQICLCKSVEFVTWISSVISYCRCNPIASFACRRPGKNN

Sequence

>CNT30243105
CACCGGCCCACCAGTAATCCCAGTTAGGGTTTGTCCATCGTCGCCCTATATAAAACCAGGACGAGAGCAGCCGCCGCCGCACATCCGCTTCTCACTCTTC
CAACAGCCGCCGCCGTACGAGGCAGCCGCCCGGAGGAGACCGCCACCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGAGGCTCAAGAG
GAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGGAGGATGAGCCCCGCCTGCTTCTGTTTCTTGGCCGCTGTCGGATGCAGTGTTCTAATCGAATTTAG
TTCAGTACTCAATTTAGTTCTTGCCAGCAGGAAAACCTATCCTAGTGGACTGTATCTTTAATTTTAAACCTCCGTTCTTGCATCCTGTTTGTGAGGTGTT
AATGAAGACTGGTGTTCTTCAGTATTTTCTTGCAATTAGCAACAATGCCATCAAAATCGCCTTTCTCCAAATCTGTTTGTGTAAAAGCGTTGAATTTGTT
ACCTGGATCTCGAGTGTCATTTCATATTGCAGGTGTAACCCGATTGCTTCTTTTGCATGTAGAAGACCAGGAAAAAATAAC