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Detailed information on CNT30317675


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Corylus avellanaOryza sativa24.1616.2993.8565forward
CNT30675831Corylus avellanaSetaria viridis23.0511.4296.7762forward
CNT30523531Corylus avellanaSetaria italica23.059.0496.7762forward
CNT30547713Corylus avellanaIpomoea triloba24.167.5810065forward
CNT30517219Corylus avellanaJuglans regia30.484.4295.1282forward
CNT30701463Corylus avellanaQuercus lobata29.7415.59580forward
CNT30500546Corylus avellanaCoffea canephora23.0513.3996.7762forward
CNT30278460Corylus avellanaChenopodium quinoa28.6212.3894.8177forward
CNT3070099Corylus avellanaQuercus suber29.7414.369580forward
CNT30404042Corylus avellanaBeta vulgaris24.1613.5498.4665forward
CNT30526086Corylus avellanaPhaseolus vulgaris29.3714.7993.6779forward
CNT30628611Corylus avellanaVigna unguiculata28.6215.7194.8177forward
CNT30199009Corylus avellanaPisum sativum24.1612.2498.4665forward
CNT30494259Corylus avellanaOlea europaea24.1612.998.4665forward
CNT30712442Corylus avellanaGlycine max28.624.5996.177forward
CNT3043428Corylus avellanaPrunus dulcis23.0513.8498.3962forward
CNT30163346Corylus avellanaPistacia vera23.059.3710062forward
CNT30638745Corylus avellanaCapsicum annuum31.9716.993.0286forward
CNT3094527Corylus avellanaSolanum tuberosum28.2514.5694.7476forward
CNT30562614Corylus avellanaActinidia chinensis24.1611.0595.3865forward
CNT3085655Corylus avellanaVigna radiata29.3716.4993.6779forward
CNT30172276Corylus avellanaTrifolium pratense23.0512.8198.3962forward
CNT30145007Corylus avellanaMedicago truncatula27.8812.6397.3375forward
CNT30442977Corylus avellanaAegilops tauschii23.7913.6595.3164forward
CNT30242945Corylus avellanaAvena sativa24.169.893.8565forward
CNT30313662Corylus avellanaCamelina sativa24.1614.1395.3865forward
CNT3061383Corylus avellanaArabidopsis lyrata23.0510.1393.5562forward
CNT30601041Corylus avellanaFraxinus excelsior24.1611.6596.9265forward
CNT30468162Corylus avellanaSaccharum spontaneum24.168.8896.9265forward
CNT30132841Corylus avellanaLolium perenne24.1612.593.8565forward
CNT3011623Corylus avellanaZea mays23.7915.8493.7564reverse complement
CNT30610456Corylus avellanaGossypium raimondii29.748.692.580forward
CNT30216203Corylus avellanaKalanchoe fedtschenkoi26.3916.5597.1871forward
CNT30652772Corylus avellanaRosa chinensis23.0510.4298.3962forward
CNT30207458Corylus avellanaHelianthus annuus28.6213.8593.5177forward
CNT30715353Corylus avellanaMalus domestica golden296.3593.5978forward
CNT30625213Corylus avellanaDaucus carota26.3913.294.3771forward
CNT30348934Corylus avellanaEragrostis tef23.793.6296.8864reverse complement
CNT30479698Corylus avellanaArabidopsis halleri25.2814.8595.5968forward
CNT30363122Corylus avellanaSorghum bicolor23.7916.3793.7564reverse complement
CNT30596688Corylus avellanaOryza meridionalis23.0511.598.3962forward
CNT30355299Corylus avellanaLactuca sativa28.6211.0892.2177forward
CNT30154619Corylus avellanaPrunus persica23.0515.2798.3962forward
CNT30423745Corylus avellanaPapaver somniferum23.0512.9296.7762forward
CNT30704989Corylus avellanaPrunus avium29.3710.3893.6779forward
CNT3057178Corylus avellanaAmborella trichopoda23.7911.0995.3164reverse complement
CNT30320568Corylus avellanaAsparagus officinalis25.2811.1894.1268forward
CNT30120214Corylus avellanaCitrus clementina29.3715.494.9479forward
CNT3038456Corylus avellanaCucumis melo23.0512.495.1662forward
CNT30584684Corylus avellanaEchinochloa crusgalli23.0512.9796.7762forward
CNT30499031Corylus avellanaDigitaria exilis24.1612.1593.8565forward
CNT30593864Corylus avellanaEragrostis curvula24.1611.6593.8565forward
CNT30174981Corylus avellanaVigna angularis28.2515.4594.7476forward
CNT30556718Corylus avellanaPanicum hallii24.1614.5193.8565forward
CNT30112246Corylus avellanaFicus carica29.3714.1693.6779forward
CNT3050740Corylus avellanaCucumis sativus24.169.8595.3865forward
CNT30115398Corylus avellanaEutrema salsugineum23.0512.6595.1662forward

Expression of CNT30317675

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MRAKWKKKRMRRLKRKRRKMRQRSNGRCAVIVPTTLKKQ

Sequence

>CNT30317675
AATGAAGCCGACTATACATTAGGGTTTCTTCTCGAATCATTATAAATACTCTCAAACCCTTAGACGATTTTAGCGTCTAGCCCACTTGCCTTTTGAGCAG
ATTAGGGTTTCAGAAGCGAGGTAGCGAGGAGAACAAAGGAGCCGAATCACCATGCGTGCGAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGC
GCCGAAAGATGAGGCAGAGATCCAATGGGCGGTGTGCGGTCATTGTACCAACGACTTTGAAGAAGCAAT