Detailed information on CNT30722009


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Triticum speltaOryza sativa21.2422.3197.7589forward
CNT30678059Triticum speltaSetaria viridis21.7216.8296.791forward
CNT30249469Triticum speltaAvena sativa40.135.4489.88168forward
CNT30447879Triticum speltaSaccharum spontaneum22.218.0695.793forward
CNT30136282Triticum speltaLolium perenne22.216.8597.8593forward
CNT3013205Triticum speltaZea mays219.7194.3288forward
CNT30219096Triticum speltaKalanchoe fedtschenkoi20.0523.9394.0584forward
CNT30716113Triticum speltaMalus domestica golden20.2914.7894.1285forward
CNT30348900Triticum speltaEragrostis tef22.220.0497.8593forward
CNT30704139Triticum speltaPrunus avium20.7617.2390.887forward
CNT30499031Triticum speltaDigitaria exilis21.7217.0196.791forward
CNT30593864Triticum speltaEragrostis curvula22.216.6797.8593forward
CNT30551345Triticum speltaOryza brachyantha20.051595.2484forward

Expression of CNT30722009

SRR9114152: 223.29 RPKM

Peptides detected in this lncRNA

>peptide 1 (49 aa)
SGSSTHSHRCHPREPESEADTAAAMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 2 (98 aa)
IGFVHTLPPLPSPRTGERGRHRRRDEGQVEEEEDEEAQEEAPKDEAAIQVGALEGGEASSCIQAARHRGMTAWSSDSRRVCCDGCGNCLTCVLSNLAV*

Sequence

>CNT30722009
GATCGGGTTCGTCCACACACTCCCACCGCTGCCATCCCCGCGAACCGGAGAGCGAGGCCGACACCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAG
GATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCAAGTAGGCGCCTTGGAAGGAGGGGAAGCATCATCTTGCATCCAGGCTGCCAGGC
ACCGAGGGATGACGGCATGGTCTAGTGATTCAAGGCGTGTTTGCTGCGATGGCTGTGGAAACTGTTTAACCTGTGTTCTGTCCAATTTAGCTGTTTAATG
CCTAGTCTGGTTATGTTCCAAGACTGAGTTTTATGTAATGTGAGGATTATATGTGTTTGTGACTGAATTTTATGCAGCTATTAATTTTGCAGTACTCTGA
AATATGTAATTCTCACCTG