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Detailed information on CNT30554009


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 2e-141

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676938Oryza glaberrimaSetaria viridis66.9737.9892.33365forward
CNT30524664Oryza glaberrimaSetaria italica64.9525.8696.33354forward
CNT30641660Oryza glaberrimaNymphaea colorata64.9529.2193.5354reverse complement
CNT30536068Oryza glaberrimaEucalyptus grandis61.289.793.71334reverse complement
CNT30378667Oryza glaberrimaArabidopsis thaliana31.5615.3793.6172forward
CNT30500477Oryza glaberrimaCoffea canephora61.2818.3494.61334forward
CNT30730500Oryza glaberrimaCorchorus capsularis61.2828.1494.61334forward
CNT30381505Oryza glaberrimaManihot esculenta34.1363.9289.25186forward
CNT30403504Oryza glaberrimaBeta vulgaris32.6680.5494.38178reverse complement
CNT30525072Oryza glaberrimaPhaseolus vulgaris37.0647.3194.06202reverse complement
CNT30196411Oryza glaberrimaPisum sativum60.5526.0992.12330forward
CNT30503431Oryza glaberrimaNicotiana attenuata61.2824.1994.61334reverse complement
CNT30709956Oryza glaberrimaGlycine max48.6259.0289.81265forward
CNT3044711Oryza glaberrimaPrunus dulcis52.4859.9694.06286reverse complement
CNT30187663Oryza glaberrimaSecale cereale66.6131.0396.97363forward
CNT30400299Oryza glaberrimaTriticum turgidum65.3216.6996.63356forward
CNT30588765Oryza glaberrimaMusa acuminata58.5345.794.04319reverse complement
CNT3087623Oryza glaberrimaVigna radiata35.693.2793.3194reverse complement
CNT30248027Oryza glaberrimaAvena sativa66.9737.4795.07365reverse complement
CNT30310298Oryza glaberrimaCamelina sativa60.1821.5193.6328reverse complement
CNT3062651Oryza glaberrimaArabidopsis lyrata55.4136.393.38302reverse complement
CNT30612440Oryza glaberrimaArabis alpina42.57103.1191.38232forward
CNT30141326Oryza glaberrimaLolium perenne30.8350.698.81168forward
CNT30232563Oryza glaberrimaAnanas comosus30.644.8790.42167forward
CNT30655263Oryza glaberrimaRosa chinensis61.2818.590.72334forward
CNT30689043Oryza glaberrimaTriticum urartu66.9718.1596.99365forward
CNT30720907Oryza glaberrimaTriticum spelta66.9735.7596.44365reverse complement
CNT30357533Oryza glaberrimaLactuca sativa61.2832.8193.11334forward
CNT30483432Oryza glaberrimaChara braunii26.9772.0688.44147forward
CNT30412183Oryza glaberrimaPapaver somniferum61.2811.8694.01334forward
CNT30646402Oryza glaberrimaCannabis sativa61.2826.491.32334reverse complement
CNT3056240Oryza glaberrimaAmborella trichopoda46.2488.1192.46252forward
CNT30332807Oryza glaberrimaDioscorea rotundata64.9521.4394.35354reverse complement
CNT30102893Oryza glaberrimaOryza rufipogon67.1625.9694.81366forward
CNT30576822Oryza glaberrimaOryza barthii10099.0997.8545reverse complement

Expression of CNT30554009

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MPLEPRASWFSPKCVEAQQLIGHLGVKHCFGASCARVPPFA*

>peptide 2 (38 aa)
MSRRLIGSVLVKGTEPTGAVVKASLHRAIVTAYGPEPG*

Sequence

>CNT30554009
CAGTGGGAGGGGAAAGTGATCTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGCAGTGTCTTGGTTAAGGGAACGGAACCCACCGGAGC
CGTAGTGAAAGCGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGC
AGAGGTCCGAACCGACTGATGTTCAAGAATTAACGGATGAGTTGTGGTTAGGGGTGAAATGCCGCTCGAACCCAGAGCTAGCTGGTTCTCACCGAAATGT
GTTGAGGCGCAGCAGTTGATTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGAGCTGCGCGAGAGTACCCCCTTTTGCCTAGACTTCAAGCAGTTTAG
CTTTAACCGTGTTAATGGTCTCATATTATTGGTCTATAGAGAATCAAAGTTGATTTGATTTACCAATAGGTCGCGAAATGCTATGGTTCTTTCATATGAT
TTCTGCATTTATTCAGAAGTAATTCGTCGAGATCGTGCACCCTTT