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Detailed information on CNT30676938


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 3e-48

BLAST vs NONCODE:
NONZMAT001339, E-value = 3e-145

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641660Setaria viridisNymphaea colorata50.3639.9390.7484reverse complement
CNT30193801Setaria viridisSecale cereale51.6135.1394.56496forward
CNT30554009Setaria viridisOryza glaberrima37.9866.9792.33365forward
CNT30248027Setaria viridisAvena sativa45.6845.0792.48439reverse complement
CNT30688464Setaria viridisTriticum urartu51.6126.9694.76496forward
CNT30720907Setaria viridisTriticum spelta51.6148.5894.35496reverse complement
CNT30357533Setaria viridisLactuca sativa45.0642.5388.68433forward
CNT30319706Setaria viridisAsparagus officinalis51.417.1991.3494forward
CNT30332807Setaria viridisDioscorea rotundata51.6130.0291.13496reverse complement
CNT30148090Setaria viridisBrachypodium distachyon51.6117.0794.56496reverse complement
CNT30102893Setaria viridisOryza rufipogon51.435.0492.91494forward
CNT30576679Setaria viridisOryza barthii38.470.2993.22369forward
CNT30581628Setaria viridisEchinochloa crusgalli24.1467.8494.4232forward

Expression of CNT30676938

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MSVKMRTTCTWTERPYEALLFTGIGFRPILRSLGVGLPKGNGGVQRFPRARRTLVLECKGRRER

>peptide 2 (42 aa)
MPAQCWKVKEVGELMIGKPAAKALVNGGRNYNGPKVAKFLVR*

>peptide 3 (92 aa)
MLLEPRASWFSPKCVEAQQLTGHLGVKHGFSAGYASGTKLRQTLNTRYDPKITGVAVTRPGRLFTKNTGLRKVVRPCMGADACPMLEGQGSW*

>peptide 4 (38 aa)
MSRRLIGNGLVKGMEPTEAVLKASLHRVIVTAYGPKPR*

Sequence

>CNT30676938
ACCGTGAGGGAAAGGTGAAAAGAACCCCCAGTGGGTAGTGAAATAGAACATGAAACTGTGCTGAGCTCCCAAGCAGTGGGAGGGAAAAGTGATCTCTGAC
CGCGTGCGTGTTGAAGAATGAGCCGGCGACTCATAGGCAATGGCTTGGTTAAGGGAATGGAACCCACTGAAGCTGTATTGAAAGCGAGTCTTCATAGGGT
GATTGTCACTGCTTATGGACCCAAACCTAGGTGATCTATCCCTGACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAATTGACTGATGTTGAAG
AATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCTACTCGAACCCAGAGCGAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACAT
CTAGGGGTAAAGCACGGTTTCAGTGCGGGCTACGCGAGCGGTACCAAATTAAGGCAAACTCTGAATACTAGGTATGACCCAAAAATAACAGGGGTCGCTG
TGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGAGCTGATGCCTGCCCAATGCTGGAAGGTCAAGG
AAGTTGGTGAACTAATGATAGGGAAGCCGGCGGCCAAAGCCCTGGTGAACGGCGGTCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCAGGTA
AGTTCCGACCTGCACGAAAGGCATAATGATCTAGGCACTGTCTCGGAGAGAGGCTCAGTGAAATAGACATGTCTGTGAAGATGAGGACTACCTGCACCTG
GACAGAAAGACCCTATGAAGCTTTACTGTTCACTGGGATTGGCTTTAGGCCTATCCTGCGCAGCTTAGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTG
CAAAGGTTTCCTCGGGCCAGACGGACATTGGTCCTCGAGTGCAAAGGTAGAAGGGAGCGAA