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Detailed information on CNT30400299


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Triticum turgidumOryza sativa84.2970.2399.281798forward
CNT30524664Triticum turgidumSetaria italica61.2895.4798.391307forward
CNT30639555Triticum turgidumNymphaea colorata43.7954.6895.18934forward
CNT30536068Triticum turgidumEucalyptus grandis48.229.8593.481028reverse complement
CNT30513456Triticum turgidumJuglans regia48.232.3994.551028forward
CNT30500477Triticum turgidumCoffea canephora48.256.4594.651028forward
CNT30269781Triticum turgidumChenopodium quinoa48.134.7293.471026forward
CNT30730500Triticum turgidumCorchorus capsularis48.286.695.531028forward
CNT30630109Triticum turgidumVigna unguiculata48.232.6194.551028forward
CNT30196411Triticum turgidumPisum sativum46.7978.8992.69998forward
CNT3090649Triticum turgidumSolanum tuberosum48.237.694.941028forward
CNT30186247Triticum turgidumSecale cereale59.7789.6699.691275forward
CNT30291213Triticum turgidumTriticum aestivum66.4840.8299.651418forward
CNT30225309Triticum turgidumHordeum vulgare49.687.895.371058forward
CNT30554009Triticum turgidumOryza glaberrima16.6965.3296.63356forward
CNT30248027Triticum turgidumAvena sativa44.497.2397.25947reverse complement
CNT30310298Triticum turgidumCamelina sativa47.9167.0295.211022reverse complement
CNT3062651Triticum turgidumArabidopsis lyrata32.382.8195.79689reverse complement
CNT30460907Triticum turgidumSaccharum spontaneum66.4842.5699.151418forward
CNT3018333Triticum turgidumZea mays66.4849.6799.221418forward
CNT30655263Triticum turgidumRosa chinensis46.5555.0191.94993forward
CNT30206724Triticum turgidumHelianthus annuus45.9445.1695.92980forward
CNT30689044Triticum turgidumTriticum urartu73.3758.0599.31565forward
CNT30722943Triticum turgidumTriticum spelta44.7347.3999.58954forward
CNT30596725Triticum turgidumOryza meridionalis66.5341.1299.221419forward
CNT30154922Triticum turgidumPrunus persica48.260.8691.341028reverse complement
CNT30411255Triticum turgidumPapaver somniferum48.233.8694.551028reverse complement
CNT30646402Triticum turgidumCannabis sativa42.8572.2591.14914reverse complement
CNT30319706Triticum turgidumAsparagus officinalis48.4335.9495.841033forward
CNT30332807Triticum turgidumDioscorea rotundata47.5961.4495.861015reverse complement
CNT30148090Triticum turgidumBrachypodium distachyon53.5939.3599.391143reverse complement
CNT30102929Triticum turgidumOryza rufipogon49.0468.7397.611046reverse complement
CNT30576679Triticum turgidumOryza barthii16.6967.8197.47356forward

Expression of CNT30400299

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MPRAEVRVPSAAALKYEPRGLAIASPRGSYQALRR*

>peptide 2 (32 aa)
MSKCIGRGAFRLRGKQPRKRGSTKRKRECRLE*

>peptide 3 (29 aa)
MGHVESRVNQQGPPCKAKYSWVTDSEVVP*

>peptide 4 (59 aa)
MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCASGTKSRQTLNTRYDPKITGVKVGQ*

>peptide 5 (68 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNRESGGRRSGSENVGLSNENIGENPMPRKPKVSSARFVHGG*

>peptide 6 (38 aa)
MSRRLIGSGLVKGTEPTGAVAKASLNRAIVTAYGPEPG*

>peptide 7 (48 aa)
MGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA*

Sequence

>CNT30400299
GCATAGTATTCTTTTTCACTTAAATGAATTTTTGTATTTGTAATTCATTGATATTGCAATTTGAATATTGCAATAATTTATATTGAAAAGACGATAGCCA
ATTTATTGGCTAATTCGAATTCGTCTGTACAATTCGTAAAATTCTTTCTTATTTCTTATTGTTGAAATCCAAAATTAAAGTCTCTTGGCTCTCTTCACGC
TTTCTCACAAACAGATTAAAAAATAGATTTTTATTTTTGAAGTTTGGATAAACCATTGCTTCGTCTGGTGTCTACAATACATATAACTCATTATAGTACT
AATTTCAATAAAACAGAGAGAGTTTTAATATCTTTGATCCGGAGATTCCCAAATAGGTCAACCTTTTAAACTGCCTGCTGAATCCATGAGCAGGCAAGAG
ACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGA
AAACGGGGTTGTGGGAGAGCAATACAAGCGTTGTGCTGCTAGGCGAAGCGGTTGAGTGCCGCACCCTAGATGGCTAAAGTCCAGTAGCCGAAAGCATCAC
TAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTGGAATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGC
GAAGTAGTACCGTGAGGGAAAGTGATCTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACGGAACCCAC
CGGAGCCGTAGCGAAAGCGAGTCTTAATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAA
ATAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCG
AAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCTGCGCGAGCGGTACCAAATCGAGGCAAACTCTGAATA
CTAGATATGACCCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAA
GGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCT
CACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAG
AGGGAAGCAACCGCGAAAGCGGGGGTCGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAATCCAATGCCCCGAAAACCCAA
GGTTTCCTCCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGACAACAGGTCAATATTCCTGTACTACCC
CTTGTTGGTACGGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATAGGTTTAAGGACACAAGGTGACCCTGCTTTTTCAGGGTAAGAAGGGGTA
GAGAAAATGCCTCGAGCCGAGGTCCGAGTACCAAGCGCTGCAGCGCTGAAGTATGAGCCCCGTGGACTAGCGATTGCTTCTCCACGAGGCTCATACCAGG
CGCTACGGCGCTGAAGTATGTAACTGATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGGTGGG
TAGGTAGAGAATACCTAGGGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGGGG
GCCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAG
GTCAAGGAAGTTGGTGAACTGATGACAAGGAAT