« Back to Nicotiana attenuata search


Detailed information on CNT30503431


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Nicotiana attenuataOryza sativa43.8123.6396.69605reverse complement
CNT30677083Nicotiana attenuataSetaria viridis30.4958.892.87421reverse complement
CNT30524664Nicotiana attenuataSetaria italica43.8144.1995.7605reverse complement
CNT30378667Nicotiana attenuataArabidopsis thaliana20.8525.7498.96288reverse complement
CNT30525072Nicotiana attenuataPhaseolus vulgaris16.5853.6399.13229forward
CNT30711335Nicotiana attenuataGlycine max26.8694.6494.88371forward
CNT3044711Nicotiana attenuataPrunus dulcis34.5410098.95477forward
CNT30221722Nicotiana attenuataHordeum vulgare33.647.3596.55464forward
CNT30385574Nicotiana attenuataTriticum turgidum57.3551.594.32792forward
CNT30588765Nicotiana attenuataMusa acuminata43.3785.8296.49599forward
CNT3088853Nicotiana attenuataVigna radiata19.3365.9398.13267forward
CNT30554009Nicotiana attenuataOryza glaberrima24.1961.2894.61334reverse complement
CNT30442488Nicotiana attenuataAegilops tauschii23.2442.1395.64321reverse complement
CNT30248027Nicotiana attenuataAvena sativa45.9865.293.54635forward
CNT30664460Nicotiana attenuataTriticum dicoccoides23.7590.6196.34328reverse complement
CNT30310298Nicotiana attenuataCamelina sativa43.0138.9598.65594forward
CNT3062651Nicotiana attenuataArabidopsis lyrata41.1368.2798.94568forward
CNT30266045Nicotiana attenuataBrassica rapa23.9774.7292.15331reverse complement
CNT30612440Nicotiana attenuataArabis alpina16.44100.8996.92227reverse complement
CNT30136319Nicotiana attenuataLolium perenne24.9160.4696.51344forward
CNT3018333Nicotiana attenuataZea mays73.6435.6295.671017reverse complement
CNT3068134Nicotiana attenuataLeersia perrieri18.9772.3892.37262forward
CNT30126841Nicotiana attenuataCorymbia citriodora20.1374.7395.32278reverse complement
CNT30720907Nicotiana attenuataTriticum spelta54.0973.1694.91747forward
CNT30357533Nicotiana attenuataLactuca sativa30.6341.5598.35423reverse complement
CNT30412251Nicotiana attenuataPapaver somniferum99.9358.6796.881380reverse complement
CNT30646402Nicotiana attenuataCannabis sativa56.4161.5894.35779forward
CNT3056240Nicotiana attenuataAmborella trichopoda18.187.4198.4250reverse complement
CNT30332807Nicotiana attenuataDioscorea rotundata72.2760.4197.7998forward
CNT30148090Nicotiana attenuataBrachypodium distachyon72.5634.4995.611002forward
CNT30576679Nicotiana attenuataOryza barthii24.1963.6295.51334reverse complement

Expression of CNT30503431

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MFQFARLSLACPWIQQQFERLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLPYSGISGSMLIFNSPKHFVDYYALPRLWVPRYPP*

>peptide 2 (61 aa)
MSRRLILQQARGQSPGSSHCLGAYGFMFYFTPRWGFFSPFPHGTTSLSVTQEYLALQGGPC*

>peptide 3 (44 aa)
MGVLFTLPSRYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA*

>peptide 4 (46 aa)
HLRRKSARSVSYYALFQGWLLLGKPPGCLCTPTSFITERSFRGLSW*

>peptide 5 (54 aa)
MSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKLHPGHG*

>peptide 6 (39 aa)
MDSAAVRKVALFGNLRIYAYFQLPEAFRRLLRPSSSLGA*

>peptide 7 (29 aa)
MDRSPRFGSISSDNCPMKTRFRYGSGGFP*

>peptide 8 (37 aa)
SSSAQERSISELLRTLSRVAASRQTSWLSLHPYLLYH*

>peptide 9 (29 aa)
MDSAAVRKAAPISLAATTGIAFAFFSSGY*

>peptide 10 (29 aa)
MLLGSEHKLVMLSATGLSPSRVQHSGCFA*

Sequence

>CNT30503431
TCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACC
TCCTTTATCACTGAGCGATCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCACTAGCCGACC
TTGACCCCTGTTATTTTGAGGTCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCTCGCGGCCCGCACCGAAACAGTGCTTTACCCCTAGAT
GTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCT
TCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATTGC
CCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAG
CCCTGGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTA
TCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCGGGTCAGAGCATAAGCTAGTGA
TGCTTTCGGCTACTGGACTTTCGCCATCTAGGGTGCAGCATTCGGGCTGCTTCGCCTAGCAGCACGACGCTTGTATTGCTCTCCCACAACCCCGTTTTCA
CGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGTCTC
TTGCCTGCCCATGGATTCAGCAGCAGTTCGAAAGGCTGCTCCCATTTCGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAA
GATGTTTCAGTTCGCCAGGTTGTCTCTTGCCTGCCCATGGATTCAGCAGCAGTTCGAAAGGTTGCCCTATTCGGGAATCTCCGGATCTATGCTTATTTTC
AACTCCCCGAAGCATTTCGTCGATTACTACGCCCTTCCTCGTCTCTGGGTGCCTAGGTATCCACCGTAAGCCTTTCCTCGTTTGAACCTCGCCCTTCACT
TTTAAGGCTATGCCATCCTAAGGTGCTGCTAAATGGATGGATCTTATCAACGTCCATGAATGATAAATCATAGATCGAACC