Detailed information on CNT3087623


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676994Vigna radiataSetaria viridis91.8338.2888.48191reverse complement
CNT30381505Vigna radiataManihot esculenta74.5253.2694.19155reverse complement
CNT30403504Vigna radiataBeta vulgaris83.1778.2898.27173forward
CNT30709956Vigna radiataGlycine max90.3841.8795.21188reverse complement
CNT3044711Vigna radiataPrunus dulcis90.8739.6298.94189forward
CNT30388224Vigna radiataTriticum turgidum93.2752.7293.81194forward
CNT30588765Vigna radiataMusa acuminata90.3826.9398.4188forward
CNT30554009Vigna radiataOryza glaberrima93.2735.693.3194reverse complement
CNT30266045Vigna radiataBrassica rapa46.1521.6790.6296reverse complement
CNT30612440Vigna radiataArabis alpina87.9881.3396.72183reverse complement
CNT30141326Vigna radiataLolium perenne75.4847.2994.9157reverse complement
CNT30357533Vigna radiataLactuca sativa90.8718.5798.94189reverse complement
CNT30643690Vigna radiataCannabis sativa90.8766.5596.3189reverse complement
CNT3056240Vigna radiataAmborella trichopoda82.2159.7996.49171reverse complement
CNT30576232Vigna radiataOryza barthii93.2750.9292.27194reverse complement
CNT30335253Vigna radiataCynara cardunculus22.65.3593.6247reverse complement

Expression of CNT3087623

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDRSPRFGSISSDNCLMKTRFRYGSGGFP*

Sequence

>CNT3087623
CGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATTGCCTTATGAAGAC
TCGCTTTCGCTACGGCTCCGGTGGTTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTACCGGACTGA
GAATTGGT