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Detailed information on CNT30102893


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001339, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676938Oryza rufipogonSetaria viridis35.0451.492.91494forward
CNT30378667Oryza rufipogonArabidopsis thaliana20.4325.7495.49288forward
CNT3044711Oryza rufipogonPrunus dulcis34.54102.193.22487reverse complement
CNT30588765Oryza rufipogonMusa acuminata43.1287.1193.91608reverse complement
CNT30511396Oryza rufipogonSolanum lycopersicum43.6967.3289.77616forward
CNT30554009Oryza rufipogonOryza glaberrima25.9667.1694.81366forward
CNT30266045Oryza rufipogonBrassica rapa23.474.4996.97330forward
CNT30627950Oryza rufipogonDaucus carota27.2389.390.62384forward
CNT30357533Oryza rufipogonLactuca sativa30.7842.6391.47434forward
CNT30576679Oryza rufipogonOryza barthii26.2470.4896.22370forward

Expression of CNT30102893

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MPLEPRASWFSPKCVEAQQLTRHLGVKHCFGAGCTSGTKSRQTLNTRYDPKITGVKVGQ*

>peptide 2 (46 aa)
DSVASDEMLWGVENKHRSGDSQIGQPFELPAESMSRQETTWRTETS*

>peptide 3 (29 aa)
MGHVESRVNQQGPPCKAKYSWVTDSEVVL*

>peptide 4 (30 aa)
MGDKLHRREGNSPDHQLSDLPKLWDVKMHR*

>peptide 5 (32 aa)
MSKCIGRGAFRLRGKQPRKRGSTKRKRECRLE*

Sequence

>CNT30102893
TGACAGCGTAGCAAGCGACGAAATGCTTTGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTGCTGAATCC
ATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCAAAATGGGAG
GAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTTGTGCTGCTAGGTGAAGCGGTTGAGTGCCGCACCCTAGATGGCTAAAGTTCAGT
AGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTGGAATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCC
TGGGTGACCGATAGCGAAGTAGTACTGTGAGGGAAAGGTGAAAAGAACCCCTAGTGGGTAGTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGT
GGGAGGGGAAAGTGATCTCTGACCGCGTGCCTATTGAAGAATGAGCCGGTGACTCATAGGCAGTGGCTTGGTTAAGGGAACGGAACCCACCAGAGCCGTA
GCGAAAGCGAGTCTTCATAGGGCAATTTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCAGA
GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTTGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTT
GAGGCACAGCAGTTGACTAGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCTGCACGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATG
ACCCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGCGATCTGC
CGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACCGCGAAAGCGGGGGTCGACGAAGCGGAAGCGAGAATGTC
GGCTTGAGTAACGAAAACATGGGTGAGAATCCAATGCCCCGAAAACCCACCAAGAATTCCTCCGCAAGGTTCGTCCACGGAGGGCGAGTCAAGGCCTAAG
ATCAGGCCGAAAGGTGTAGTCGATGGACAACAGGTCAATATTCCTGTACTACCCCTTGTTGGTACGGAGGGACGGAGTAGGCTAGGTTAGCCGAAAGATG
GTTATAGGTTTAAGGACACAAGGTGACCATGCTTTTTCAGGGTAAGAAGGGGTAGAGAAAATGCCTCGAGCCGAGGTCCGAGTACCAAGCGCTGCAGCGC
TGAAGTATGA