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Detailed information on CNT30357533


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696475Lactuca sativaOryza sativa34.5813.7595.45352forward
CNT30676938Lactuca sativaSetaria viridis42.5345.0688.68433forward
CNT30524664Lactuca sativaSetaria italica33.124.6295.25337forward
CNT30641660Lactuca sativaNymphaea colorata41.7535.0796.94425reverse complement
CNT30536068Lactuca sativaEucalyptus grandis60.1217.7792.48612reverse complement
CNT30501327Lactuca sativaCoffea canephora55.0142.5594.64560forward
CNT30269781Lactuca sativaChenopodium quinoa41.5514.3195.27423forward
CNT30730500Lactuca sativaCorchorus capsularis41.5535.6498.35423forward
CNT30381505Lactuca sativaManihot esculenta17.7862.296.13181forward
CNT30403504Lactuca sativaBeta vulgaris16.9978.2899.42173reverse complement
CNT30525072Lactuca sativaPhaseolus vulgaris21.6151.5296.82220reverse complement
CNT30630109Lactuca sativaVigna unguiculata42.7313.894.94435forward
CNT30202034Lactuca sativaPisum sativum41.6524.995.05424reverse complement
CNT30503431Lactuca sativaNicotiana attenuata41.5530.6398.35423reverse complement
CNT30709956Lactuca sativaGlycine max29.5767.0493.69301forward
CNT3044711Lactuca sativaPrunus dulcis35.0774.8499.44357reverse complement
CNT3090144Lactuca sativaSolanum tuberosum59.4315.4297.19605forward
CNT30193801Lactuca sativaSecale cereale42.5330.6792.38433forward
CNT30221722Lactuca sativaHordeum vulgare21.6122.4594.09220reverse complement
CNT30390355Lactuca sativaTriticum turgidum59.6387.4691.27607reverse complement
CNT30566352Lactuca sativaActinidia chinensis19.0653.0187.63194reverse complement
CNT30588765Lactuca sativaMusa acuminata36.6453.4496.51373reverse complement
CNT3087623Lactuca sativaVigna radiata18.5790.8798.94189reverse complement
CNT30511396Lactuca sativaSolanum lycopersicum20.4322.7395.67208forward
CNT30554009Lactuca sativaOryza glaberrima32.8161.2893.11334forward
CNT30248027Lactuca sativaAvena sativa33.134.693.77337reverse complement
CNT30310298Lactuca sativaCamelina sativa33.522.3697.65341reverse complement
CNT3062651Lactuca sativaArabidopsis lyrata30.9437.8697.78315reverse complement
CNT30266045Lactuca sativaBrassica rapa11.225.7392.98114forward
CNT30612440Lactuca sativaArabis alpina22.3100.8996.92227forward
CNT30141326Lactuca sativaLolium perenne15.4247.2996.18157forward
CNT30655263Lactuca sativaRosa chinensis41.5523.4394.8423forward
CNT30206293Lactuca sativaHelianthus annuus41.5519.2598.82423forward
CNT30688894Lactuca sativaTriticum urartu50.7961.6291.49517reverse complement
CNT30720907Lactuca sativaTriticum spelta42.5342.4192.15433reverse complement
CNT30154922Lactuca sativaPrunus persica40.5724.4592.98413reverse complement
CNT30483432Lactuca sativaChara braunii13.8569.1290.07141forward
CNT30412183Lactuca sativaPapaver somniferum41.5515.0297.64423forward
CNT30646402Lactuca sativaCannabis sativa41.5533.4494.56423reverse complement
CNT3056240Lactuca sativaAmborella trichopoda24.5687.4198250forward
CNT30319706Lactuca sativaAsparagus officinalis41.7514.7996.94425forward
CNT30332807Lactuca sativaDioscorea rotundata41.7525.7396.71425reverse complement
CNT30102893Lactuca sativaOryza rufipogon42.6330.7891.47434forward
CNT30576679Lactuca sativaOryza barthii32.8163.6294.01334forward

Expression of CNT30357533

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTAPNFSDLAVRSMIYHSWTLIRSIHLAAP*

>peptide 2 (37 aa)
MPLEPRASWFSPKCVEAQQLTGHQGVKHCFRAGRESGT

>peptide 3 (37 aa)
MVESVGGPERRWFTLRRMSAVRVRLSPTRELSRYKAI*

>peptide 4 (39 aa)
LSGWAVRVGEGQSLILKTSVLKAKESAEKGGKLSVPGFL*

>peptide 5 (61 aa)
MDVDKIHPFSSTLGWHSLKIKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGGEKNPHRGVK*

Sequence

>CNT30357533
GCTCTCAGGTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCGTTCTTAAGGCCAAAGAGTCGGCGGAAAAGGGGGGAAAGCTC
TCCGTTCCTGGTTTCCTGTAGCTGGATCCTCCGGAACCACAAGAATCCTTAGTTAGAATGGGATTCCAACTCAGCACCTTTTGAGTGAGATTTTGAGAAG
AGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCGGGGGA
CCTGAGAGGCGGTGGTTTACCCTGCGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGACAGCACC
CAATTTTTCCGATTTGGCGGTTCGATCTATGATTTATCATTCATGGACGTTGATAAGATCCATCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAA
TTAAGGGCGAGGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGGTGA
AAAGAACCCCCATCGGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGCTCTGACCGCGTGCCTGTTGAAGAATGAG
CCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACC
TGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGG
TGAAATGCCACTCGAACCCAGAGCTAGCTGGTTTTCCCCGAAATGCGTTGAGGCACAGCAGTTGACTGGACATCAAGGGGTAAAGCATTGTTTCCGTGCG
GGCCGCGAGAGCGGTACC