Detailed information on CNT30641660


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676938Nymphaea colorataSetaria viridis39.9350.3690.7484reverse complement
CNT30525072Nymphaea colorataPhaseolus vulgaris18.8953.6399.13229forward
CNT30711335Nymphaea colorataGlycine max30.6194.6493.8371forward
CNT3044711Nymphaea colorataPrunus dulcis39.3610097.69477forward
CNT30554009Nymphaea colorataOryza glaberrima29.2164.9593.5354reverse complement
CNT30612440Nymphaea colorataArabis alpina18.73100.8996.48227reverse complement
CNT30357533Nymphaea colorataLactuca sativa35.0741.7596.94425reverse complement
CNT3056240Nymphaea colorataAmborella trichopoda20.6387.4198250reverse complement
CNT30576679Nymphaea colorataOryza barthii29.7968.7694.18361reverse complement

Expression of CNT30641660

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLLGSERKPVMLSATGLSPSSTTLVLLSHNPVFTV*

>peptide 2 (77 aa)
MSRRLILQQARGQRSNSPPTAWELTVSCSISLPDGGSFHLSLTVLLRYRSPGVFSLARWSLLIHTGFHVPHATRVRA*

>peptide 3 (31 aa)
MLIFNSPKHFVACYAFLVSGCLGIHRKPFLV*

>peptide 4 (29 aa)
MDRSPRFGSISSDNCPMKTRFRYGSGGFP*

>peptide 5 (40 aa)
PSSHWPTLTPVILFWVISSIQSLPRFGTALAARTETVLYP*

>peptide 6 (54 aa)
MSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKLHPGHG*

>peptide 7 (42 aa)
MINHRSNCRIGKMQFGAIIYLRLRSRAGLEISGLEPLTSATG*

>peptide 8 (43 aa)
MDSAAVRKVDLFGNLRIYAYFQLPEAFRRLLRLPRLWVPRYPP*

>peptide 9 (66 aa)
MAPVGSLNQATAYESPAHSSTGTRSEIQFSSHCLGAHGFMFYFTPRWGFFSPFPHGTTSLSVTRSI*

Sequence

>CNT30641660
CCCCATCGTCTCACTGGCCGACCTTGACCCCTGTTATTTTGTTTTGGGTCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCTCGCGGCCCG
CACCGAAACAGTGCTTTACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACC
CCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGG
TTCGGGTCCATAAGCAGTGACAATTGCCCTATGAAGACTCGCTTTCGCTATGGCTCCGGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCT
CATTCTTCAACAGGCACGCGGTCAGAGATCCAATTCTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTT
CACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATG
CTACTCGGGTCAGAGCGTAAGCCAGTGATGCTTTCGGCTACTGGACTCTCGCCATCTAGCACGACGCTTGTATTGCTCTCCCACAACCCCGTTTTCACGG
TTTAGGCTGCTCCCATTTCGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGTCTCTGC
CTGCCCATGGATTCAGCAGCAGTTCGAAAGGTTGACCTATTCGGGAATCTCCGGATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTGCTAC
GCCTTCCTCGTCTCTGGGTGCCTAGGTATCCACCGTAAGCCTTTCCTCGTTTGAACCTCGCCGTTAACGTTAAGGCTATGCCATCCTAAGGTGCTGCTAA
ATGGAAGGATCTTATCAACGTCCATGAATGATAAATCATAGATCGAACTGCCGAATCGGAAAAATGCAATTTGGTGCTATCATATACCTTCGGCTAAGAT
CACGAGCTGGACTGGAGATAAGCGGACTCGAACCGCTGACATCCGCCACAGGGTAAACCACCGCCTCTCAGGCCTCCCGACTGATTCTACCATAGAGGCC
AACGATAGACAA