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Detailed information on CNT30720907

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30676938	Triticum spelta	Setaria viridis	48.58	51.61	94.35	496	reverse complement
CNT30524664	Triticum spelta	Setaria italica	86.78	64.72	98.31	886	reverse complement
CNT30639555	Triticum spelta	Nymphaea colorata	100.49	60.07	94.64	1026	reverse complement
CNT30616920	Triticum spelta	Sesamum indicum	51.13	53.43	88.12	522	forward
CNT30196858	Triticum spelta	Pisum sativum	100.2	55.09	91.79	1023	reverse complement
CNT30503431	Triticum spelta	Nicotiana attenuata	73.16	54.09	94.91	747	forward
CNT3044711	Triticum spelta	Prunus dulcis	41.92	89.73	93.46	428	forward
CNT30186247	Triticum spelta	Secale cereale	99.8	71.66	99.51	1019	reverse complement
CNT30291213	Triticum spelta	Triticum aestivum	100	29.39	99.51	1021	reverse complement
CNT30385574	Triticum spelta	Triticum turgidum	94.12	62.48	98.23	961	forward
CNT30588765	Triticum spelta	Musa acuminata	43.29	63.32	95.7	442	forward
CNT3088853	Triticum spelta	Vigna radiata	26.15	65.93	96.25	267	forward
CNT30554009	Triticum spelta	Oryza glaberrima	35.75	66.97	96.44	365	reverse complement
CNT30248027	Triticum spelta	Avena sativa	89.62	93.94	97.16	915	forward
CNT3062651	Triticum spelta	Arabidopsis lyrata	67.48	82.81	95.65	689	forward
CNT30460907	Triticum spelta	Saccharum spontaneum	100	30.64	99.41	1021	reverse complement
CNT3018333	Triticum spelta	Zea mays	100	35.76	99.41	1021	reverse complement
CNT3068134	Triticum spelta	Leersia perrieri	33.4	94.2	94.43	341	forward
CNT30206293	Triticum spelta	Helianthus annuus	100	46.47	95	1021	reverse complement
CNT30126841	Triticum spelta	Corymbia citriodora	33.79	92.74	93.33	345	reverse complement
CNT30363927	Triticum spelta	Sorghum bicolor	35.06	88.83	99.16	358	reverse complement
CNT30596725	Triticum spelta	Oryza meridionalis	100	29.59	99.61	1021	reverse complement
CNT30357533	Triticum spelta	Lactuca sativa	42.41	42.53	92.15	433	reverse complement
CNT30370808	Triticum spelta	Oryza glumipatula	20.37	95.85	100	208	reverse complement
CNT30411768	Triticum spelta	Papaver somniferum	100	34.82	94.81	1021	forward
CNT30646402	Triticum spelta	Cannabis sativa	100.49	81.11	89.67	1026	forward
CNT30332807	Triticum spelta	Dioscorea rotundata	100	61.8	95.89	1021	forward
CNT30148090	Triticum spelta	Brachypodium distachyon	100	35.15	99.41	1021	forward
CNT30103033	Triticum spelta	Oryza rufipogon	100.39	66.09	97.66	1025	forward
CNT30576679	Triticum spelta	Oryza barthii	36.14	70.29	97.29	369	reverse complement

Expression of CNT30720907

SRR9114152: 0.0 RPKM

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MDRSPRFGSISSDNRPIKTRFRYGSGGFRSLNQATAYESPAHSSTGTRSEITFPSHCLGAQHGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQGG

>peptide 2 (34 aa)
MFSLLKPTFSLPLRRPPLSRLLPSKAERSPTDAF*

>peptide 3 (35 aa)
MHFGENQLALGSSGISPLTTTHPLILQHQSVRTSA*

>peptide 4 (54 aa)
MSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLCLVSSKLHPGHG*

>peptide 5 (55 aa)
MSRRLILQQARGQRSLSPPTAWELSTVSRSISLPTGGSFHLSLTVLLRYRSPRSI*

>peptide 6 (68 aa)
RGSTRILTCCPSTTPFGLILGPDSPSVDEPCGGNLGFSGHWILTNVFVTQADILASASSTPAFAVASL*

Sequence

>CNT30720907
CAAGGGGTAGTACACGAATATTGACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGG
AAACCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCGACCCCCGCTTTCGCGGTTGCT
TCCCTCTAAGGCGGAACGCTCCCCTACCGATGCATTTTGACATCCCACAGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCAGCGCAAGGGCGCTCGAT
CAGTGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAG
GGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCACTGGCCGACCTTGACCCCTGTTATTTTTGGGTCATA
TCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCGCGCAGCCCGCACCGAAACAGTGCTTTACCCCTAGATGTCTAGTCAACTGCTGCGCCTCAATG
CATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTG
CTTAGTTTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATCGCCCTATTAAGACTCGCTTTCGCTACGG
CTCCGGTGGGTTCCGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACTTTCCCCTCCCACTGC
TTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGT
ATTTAGCCTTGCAAGGTGGTC