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Detailed information on CNT30403504


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676994Beta vulgarisSetaria viridis80.5435.6789.33178reverse complement
CNT30381505Beta vulgarisManihot esculenta62.947.7794.24139reverse complement
CNT30709956Beta vulgarisGlycine max78.2838.5394.8173reverse complement
CNT3044711Beta vulgarisPrunus dulcis78.2836.2799.42173forward
CNT30226544Beta vulgarisHordeum vulgare27.610.5998.3661forward
CNT30388224Beta vulgarisTriticum turgidum80.5448.3794.94178forward
CNT30588765Beta vulgarisMusa acuminata77.8324.6498.84172forward
CNT3087623Beta vulgarisVigna radiata78.2883.1798.27173forward
CNT30554009Beta vulgarisOryza glaberrima80.5432.6694.38178reverse complement
CNT30266045Beta vulgarisBrassica rapa29.8614.996.9766reverse complement
CNT30612440Beta vulgarisArabis alpina75.5774.2297.01167reverse complement
CNT30141326Beta vulgarisLolium perenne71.0447.2995.54157reverse complement
CNT30357533Beta vulgarisLactuca sativa78.2816.9999.42173reverse complement
CNT30483432Beta vulgarisChara braunii63.869.1289.36141reverse complement
CNT30643690Beta vulgarisCannabis sativa78.2860.9297.11173reverse complement
CNT3056240Beta vulgarisAmborella trichopoda70.1454.296.77155reverse complement
CNT30576232Beta vulgarisOryza barthii80.5446.7293.82178reverse complement
CNT30335253Beta vulgarisCynara cardunculus21.275.3593.6247reverse complement

Expression of CNT30403504

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDRSPRFGSISNDNCPMKTRFRYGSGGFP*

Sequence

>CNT30403504
CAGGATGAAGTTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAATGACAATTGCCCTATGAAGACTCGCT
TTCGCTACGGCTCCGGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGGCACACCCCTCCCACT
ACTTGAGAGCGTACGGTTACA