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Detailed information on CNT30378667


BLAST search results

BLAST vs Swiss-Prot:
sp|P15688|NU2M_BETVU, E-value = 3e-113

BLAST vs NONCODE:
NONBNAT004661, E-value = 6e-159

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677209Arabidopsis thalianaSetaria viridis25.7455.3892.01288forward
CNT30524664Arabidopsis thalianaSetaria italica24.8420.3195.68278forward
CNT30639555Arabidopsis thalianaNymphaea colorata26.1817.1596.59293forward
CNT30536068Arabidopsis thalianaEucalyptus grandis25.748.3696.18288reverse complement
CNT30513443Arabidopsis thalianaJuglans regia25.7439.0898.61288forward
CNT30500477Arabidopsis thalianaCoffea canephora25.7415.8299.31288forward
CNT3019915Arabidopsis thalianaCitrullus lanatus9.1229.9197.06102reverse complement
CNT30730500Arabidopsis thalianaCorchorus capsularis25.7424.2698.96288forward
CNT30525072Arabidopsis thalianaPhaseolus vulgaris17.7846.698.49199reverse complement
CNT30202038Arabidopsis thalianaPisum sativum25.2924.8793.99283reverse complement
CNT30503431Arabidopsis thalianaNicotiana attenuata25.7420.8598.96288reverse complement
CNT30708588Arabidopsis thalianaGlycine max8.6743.1195.8897reverse complement
CNT3044711Arabidopsis thalianaPrunus dulcis11.082699.19124reverse complement
CNT30193689Arabidopsis thalianaSecale cereale25.7423.396.53288forward
CNT30221722Arabidopsis thalianaHordeum vulgare25.7429.3995.83288reverse complement
CNT3089856Arabidopsis thalianaVigna radiata18.2348.897.06204reverse complement
CNT30511396Arabidopsis thalianaSolanum lycopersicum16.9820.7796.84190forward
CNT30554009Arabidopsis thalianaOryza glaberrima15.3731.5693.6172forward
CNT30248027Arabidopsis thalianaAvena sativa25.1128.8595.37281reverse complement
CNT30664460Arabidopsis thalianaTriticum dicoccoides15.4647.7997.11173forward
CNT30310298Arabidopsis thalianaCamelina sativa25.7418.8999.65288reverse complement
CNT3062651Arabidopsis thalianaArabidopsis lyrata25.7434.6299.65288reverse complement
CNT30612440Arabidopsis thalianaArabis alpina6.733.3397.3375forward
CNT30136319Arabidopsis thalianaLolium perenne16.8933.2296.83189reverse complement
CNT3068221Arabidopsis thalianaLeersia perrieri11.7144.7192.37131reverse complement
CNT30655263Arabidopsis thalianaRosa chinensis25.7415.9695.49288forward
CNT30206293Arabidopsis thalianaHelianthus annuus25.7413.1199.31288forward
CNT30126841Arabidopsis thalianaCorymbia citriodora10.9933.0695.12123forward
CNT30680683Arabidopsis thalianaTriticum urartu47.18100.3895.64528forward
CNT30154922Arabidopsis thalianaPrunus persica25.7417.0595.14288reverse complement
CNT30412183Arabidopsis thalianaPapaver somniferum25.7410.2396.88288forward
CNT30646402Arabidopsis thalianaCannabis sativa25.7422.7795.49288reverse complement
CNT3056240Arabidopsis thalianaAmborella trichopoda9.9238.8199.1111forward
CNT30332807Arabidopsis thalianaDioscorea rotundata25.7417.4398.26288reverse complement
CNT30102893Arabidopsis thalianaOryza rufipogon25.7420.4395.49288forward
CNT30576679Arabidopsis thalianaOryza barthii15.6433.3396.57175forward
CNT30551547Arabidopsis thalianaOryza brachyantha3796.2894.44414forward

Expression of CNT30378667

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGRESGTKSRQTLNTRYDLKITGVKVGQ*

>peptide 2 (41 aa)
MEKVIAEIGFVLARAPKSAIYLTRVCRNAETMANASIVINA*

>peptide 3 (40 aa)
HLSIRSRAVTGSPITPKANFNSPNQGSSRVVIVDSTKDIE*

Sequence

>CNT30378667
CATCTCAGTATACGATCGCGCGCAGTAACTGGGAGTCCTATTACACCTAAGGCGAACTTCAATTCACCAAACCAAGGTTCATCTCGTGTAGTGATTGTGG
ACTCTACTAAGGATATTGAGTAGACGGTTGATGTATCAGACTCGACCCTATCTTTCGTAGCATGCATTCCCATCGGTGTCGCAACTGATTCGGTAAGCTA
CGTGTCCGGTGCACGGAGAACTGCCTTCGGTCCTCCAAACTTACTTATTCGTGGCAACCTTCCGGCCGCCCAACGACCTATAACGCTAGTCACTACTCCC
ACTGGGGCTAGAAAGTAAGCCCCACAACCCAAAGCGGCGAAGAACAAATAGAATTTGCTACAAAAGCCGGCTAACGGGGGTATTCCTGCGTATGAGAACA
TAGTAATGGAGAAGGTAATAGCCGAAATAGGATTCGTTTTGGCTAGAGCGCCCAAATCCGCTATATATTTGACACGGGTTTGCCGTAATGCTGAAACTAT
GGCGAATGCATCCATCGTCATTAATGCATAAATAAAGATACCAATTAGTAGTGATTGAATTCCTTCTATGGTTCCACATGAGAAACCAGTACGAATATAA
CCTACATGTCCAATTGAACTATGAGCTAGAGGTCTTTTGACTTTCGTTTGGGCCATGGCGGCCAGTGCTCCTAAGATCATAGAAGCAATGCTGCAGAAAA
AGAAGATTTGTTGCAATGTAGCTCCATAGGAACCATAAATAGAAACACGTAAAATATTAGCAGAAATAGAGATTTTAGGCGCAATAGAAAGGAATGCTGT
AACCGGGGTGGGTGAACCCTCATAGATATCTGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAG
GGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGT
GCGGGCCGCGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCTCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGGTGGGGGAT
AAGCTTCATCGTCGAGAGG