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Detailed information on CNT30576822


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT002444, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554009Oryza barthiiOryza glaberrima99.0910097.8545reverse complement
CNT30232563Oryza barthiiAnanas comosus30.364.8788.62167reverse complement

Expression of CNT30576822

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MDRSPRFGSISSXNRPMKTRFHYGSGGFRSLNQDTAYESPAHSSTGTRSKITFPSHCL

>peptide 2 (34 aa)
MSSQLLRLNAFRGEPASSGFEWHFTPNHNSSVDS*

>peptide 3 (48 aa)
MGPLTRLKLNCLKSRQKGVLSRSPHRNSALPLDVQSTAAPQRISGRTS*

Sequence

>CNT30576822
AAAGGGTGCATGATCTCGATGAATTACTTCTGAATAAATGCAGAAATCATATGAAAGAACCATAGCATTTCGCGACCTATTGGTAAATCAAATCAACTTT
GATTCTCTATAGACCAATAATATGGGACCATTAACACGGTTAAAGCTAAACTGCTTGAAGTCTAGGCAAAAGGGGGTACTCTCGCGCAGCCCGCACCGAA
ACAGTGCTTTACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACC
ACAACTCATCCGTTGATTCTTGAACATCAGTCGGTTCGGACCTCTGCTTAGTTTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGT
CCATAAGCAGTNACAATCGCCCTATGAAGACTCGCTTTCACTACGGCTCCGGTGGGTTCCGTTCCCTTAACCAAGACACTGCCTATGAGTCACCGGCTCA
TTCTTCAACAGGCACGCGGTCAAAGATCACTTTCCCCTCCCACTGCTTGT