CANTATAdb - search

Detailed information on CNT30672686

BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y052|CALM_EUPCH, E-value = 5e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30504265	Setaria viridis	Nicotiana attenuata	33.12	66.89	82.84	204	forward

Expression of CNT30672686

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MISTQKHAMFSLIRIYKVVKVHKHSRLDLKTKYYITVKAIFSSHYCDNNTKHIIMP*

>peptide 2 (53 aa)
PTTTRHYHLHDTDTYSKGHDKLQLVILITVQFGQTYFMGTAPHLAIMTLTNSS*

>peptide 3 (49 aa)
MVPLPSASTSLIMSCSSASVGFWPRERITVPSSLVVMQPARGKRNQTYD*

Sequence

>CNT30672686
CCGACAACTACTCGACATTACCACCTGCATGATACTGATACGTACTCAAAGGGACATGACAAACTACAGCTTGTGATCCTGATAACAGTTCAATTTGGAC
AGACTTATTTCATGGGGACCGCTCCTCACTTGGCCATCATGACCTTGACGAACTCCTCGTAGTTGATCTGGCCGTCGCCATCCACGTCAGCCTCGCGGAT
CATCTCATCGACTTCCTCATCGGTCAGCTTCTCACCAAGGTTTAGGAACTCCGGGAAGTCGATGGTCCCGTTGCCATCAGCATCAACCTCGTTGATCATG
TCCTGCAGCTCTGCTTCAGTAGGGTTCTGGCCAAGGGAGCGCATCACAGTTCCCAGCTCCTTGGTAGTGATGCAACCTGCCAGGGGAAAAAGAAACCAAA
CTTATGATTAGTACTCAAAAACATGCAATGTTCTCATTAATAAGGATTTATAAAGTTGTAAAAGTCCATAAACATAGCCGGTTAGATTTAAAGACCAAAT
ACTACATAACTGTTAAGGCTATTTTTAGTTCACATTATTGTGACAATAATACAAAGCACATCATAATGCCATGATCACTTTCAGCAGCCTGAGGTGTGTC
AGCATGCCAATGACTT