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Detailed information on CNT30497675


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y609|CALM2_ORYSI, E-value = 3e-39

BLAST vs NONCODE:
NONSLYT003545, E-value = 2e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675205Digitaria exilisSetaria viridis55.791.4690.66332forward
CNT30534974Digitaria exilisEucalyptus grandis11.5828.491.369forward
CNT30617519Digitaria exilisSesamum indicum31.719.4183.6189forward
CNT30379145Digitaria exilisManihot esculenta32.2142.6785.94192forward
CNT30504265Digitaria exilisNicotiana attenuata19.6338.3682.05117forward
CNT30156599Digitaria exilisPistacia vera31.3824.883.42187forward
CNT3097357Digitaria exilisSolanum tuberosum28.368.4583.43169forward
CNT30387589Digitaria exilisTriticum turgidum32.729.3788.72195forward
CNT30560106Digitaria exilisActinidia chinensis31.3835.1583.96187forward
CNT30586817Digitaria exilisMusa acuminata38.9323.2587.93232forward
CNT30234205Digitaria exilisBrassica oleracea38.7644.5186.58231forward
CNT30553743Digitaria exilisOryza glaberrima32.7226.2491.79195forward
CNT30248464Digitaria exilisAvena sativa39.2638.4288.89234forward
CNT3080440Digitaria exilisBrassica juncea39.0942.7587.12233forward
CNT30607166Digitaria exilisGossypium raimondii29.0347.487.86173forward
CNT30483255Digitaria exilisChara braunii21.8111.6985.38130forward
CNT3026117Digitaria exilisPopulus trichocarpa21.6430.0785.27129forward
CNT3037982Digitaria exilisCucumis melo32.5535.1484.02194forward
CNT30332036Digitaria exilisDioscorea rotundata34.7365.7184.06207forward
CNT30148143Digitaria exilisBrachypodium distachyon39.0945.1690.99233forward
CNT30576402Digitaria exilisOryza barthii32.7225.991.79195forward
CNT30116198Digitaria exilisOryza nivara32.7214.7790.26195forward
CNT30335796Digitaria exilisCynara cardunculus38.4257.5483.84229forward

Expression of CNT30497675

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MTWRSSAAEMKPFWSLSNTRKASLNSAIWSSVSWSAMATRARDLAEGGMEGDGQRGEARMEGKWRGEATREEKGRQDPVAAQTDGSRG

>peptide 2 (86 aa)
MAELCCGDEAVLVLVKHTEGLLELGDLVVGELVRHGNPGEGSGGGRDGGRRAERRSANGGEVERGGHEGGEGKARPSRSADRRISWV

>peptide 3 (37 aa)
MQSVFNTKLVTTIIRRETSFKWAHLTWPSSPSRTPRS*

Sequence

>CNT30497675
GAAAGGCATGATCATTGTACCAAGATAACACAAATGTAATACAATCGCAGAGGTAATTACCGATAGGCAAAATCCCTGGGAAGGAAACAAACAACAGGTG
TTCATTGACCCACAGACCGGAATAAGGGATAACCAAATGCAGTCAGTTTTCAACACTAAACTAGTTACTACCATCATCAGGAGAGAAACTAGCTTCAAAT
GGGCACATCTCACTTGGCCATCATCACCTTCACGAACTCCTCGTAGTTGATCTGGCCATCACCATCCACGTCGGCTTCGCGGATCATCTCATCCACTTCC
TCGTCTGTCAGCTTCTCGCCAAGGTTGGTCATGACATGGCGGAGCTCTGCTGCGGAGATGAAGCCGTTCTGGTCCTTGTCAAACACACGGAAGGCCTCCT
TGAACTCGGCGATCTGGTCGTCGGTGAGCTGGTCCGCCATGGCAACCCGGGCGAGGGATCTGGCGGAGGGAGGGATGGAGGGAGACGGGCAGAGAGGCGA
AGCGCGAATGGAGGGGAAGTGGAGAGGGGAGGCCACGAGGGAGGAGAAGGGAAGGCAAGACCCAGTCGCAGCGCAGACCGACGGATCTCGTGGGTT