Detailed information on CNT30367843


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y609|CALM2_ORYSI, E-value = 8e-39

BLAST vs NONCODE:
NONPOPT000052, E-value = 5e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673553Sorghum bicolorSetaria viridis48.8782.8290.2347forward
CNT30534974Sorghum bicolorEucalyptus grandis9.7228.489.8669forward
CNT30487677Sorghum bicolorOlea europaea21.5542.1584.31153forward
CNT30504265Sorghum bicolorNicotiana attenuata9.7222.6286.9669forward
CNT30586817Sorghum bicolorMusa acuminata32.6823.2587.93232forward
CNT30234205Sorghum bicolorBrassica oleracea32.5444.5186.15231forward
CNT30248464Sorghum bicolorAvena sativa32.9638.4289.74234forward
CNT3080440Sorghum bicolorBrassica juncea32.6842.5787.5232forward
CNT3011614Sorghum bicolorZea mays88.1783.3689.78626forward
CNT30607166Sorghum bicolorGossypium raimondii24.2347.1283.72172forward
CNT30332036Sorghum bicolorDioscorea rotundata29.1565.7183.57207forward
CNT30148143Sorghum bicolorBrachypodium distachyon32.8245.1689.27233forward
CNT30496859Sorghum bicolorDigitaria exilis61.4171.1388.07436forward
CNT30335796Sorghum bicolorCynara cardunculus32.2557.5483.41229forward

Expression of CNT30367843

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MTTPPKTDHYSDITNCMILMRTQRDMTKYSFCA*

>peptide 2 (55 aa)
MAAARARDDGEEGEEGMGARARVTLLIGADGERGGRSPGPWAGFIGSGEATARGRI

>peptide 3 (33 aa)
QCNAHKIQDSHKRTKTPEKYELQQILKAPTGVQ*

>peptide 4 (86 aa)
MTWRSSAAEMKPFWSLSKTRKASLNSAIWSSVSWSAMADGCGEGTRRRGRRGGGDGCSCSRHLVDWSRWGTRWPVARTVGRIYRQR*

>peptide 5 (62 aa)
MAELSSRDETILVLVKDAEGLLELRDLVVGELVRHGRWLRRGHATTGKKGRRGWVLVLASPC*

Sequence

>CNT30367843
GCAATGCAACGCACACAAGATACAAGACTCGCACAAAAGAACCAAAACCCCTGAAAAATACGAGCTTCAACAAATCCTAAAAGCTCCAACAGGTGTGCAA
TAATGCAAGATAACATCACAATCAAAAGAAACCAGGTATCTGATGTCGCGTTCCCATGACTACACCACCTAAAACCGACCACTACTCAGACATTACCAAC
TGCATGATACTGATGCGTACTCAAAGGGACATGACAAAGTACAGCTTTTGTGCATGATAACTCGCTTCAATTTATAGATATACTTATTTCATGGGGACCG
CTCCTCACTTGGCCATCATAACCTTAACAAACTCTTCATAGTTGATCTGGCCGTCGCCATCGACGTCAGCCTCACGGATCATCTCGTCGACCTCCTCGTC
GGTCAGCTTCTCGCCGAGGTTGGTCATGACATGGCGGAGCTCAGCAGCCGAGATGAAACCATTCTGGTCCTTGTCAAAGACGCGGAAGGCCTCCTTGAAC
TCCGCGATCTGGTCGTCGGTGAGCTGGTCCGCCATGGCAGATGGCTGCGGCGAGGGCACGCGACGACGGGGAAGAAGGGGAGGAGGGGATGGGTGCTCGT
GCTCGCGTCACCTTGTTGATTGGAGCCGATGGGGAACGAGGTGGCCGGTCGCCCGGACCGTGGGCCGGATTTATAGGCAGCGGTGAGGCGACCGCGAGGG
GGAGGATTCC