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Detailed information on CNT3073928


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7DMP0|CALM2_SOLTU, E-value = 3e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673553Brassica junceaSetaria viridis52.7455.1387.01231forward
CNT30534974Brassica junceaEucalyptus grandis13.0123.4692.9857forward
CNT30545709Brassica junceaIpomoea triloba44.0620.6685.49193forward
CNT30487677Brassica junceaOlea europaea25.3430.5886.49111forward
CNT30504265Brassica junceaNicotiana attenuata26.9438.6984.75118forward
CNT3097357Brassica junceaSolanum tuberosum34.477.5586.09151forward
CNT30560106Brassica junceaActinidia chinensis39.2732.3386.05172forward
CNT30586817Brassica junceaMusa acuminata52.7423.1584.85231forward
CNT30234205Brassica junceaBrassica oleracea102.0586.1393.29447forward
CNT30553743Brassica junceaOryza glaberrima44.2926.1189.69194forward
CNT30311950Brassica junceaCamelina sativa43.3826.3588.95190forward
CNT30259872Brassica junceaBrassica rapa37.971.24100166forward
CNT30607166Brassica junceaGossypium raimondii39.547.485.55173forward
CNT30231884Brassica junceaAnanas comosus35.8414.987.26157forward
CNT30216184Brassica junceaKalanchoe fedtschenkoi36.332.7284.28159forward
CNT30204543Brassica junceaHelianthus annuus18.4936.9987.6581forward
CNT30346128Brassica junceaEragrostis tef47.9535.0684.29210forward
CNT30621990Brassica junceaCajanus cajan21.9214.590.6296forward
CNT3026117Brassica junceaPopulus trichocarpa25.5726.1185.71112forward
CNT30120491Brassica junceaCitrus clementina18.9523.3884.3483forward
CNT3037982Brassica junceaCucumis melo43.8434.7882.81192forward
CNT30332036Brassica junceaDioscorea rotundata46.3564.4485.71203forward
CNT30149356Brassica junceaBrachypodium distachyon45.438.5387.94199forward
CNT30576402Brassica junceaOryza barthii44.2925.7689.69194forward
CNT30496859Brassica junceaDigitaria exilis39.0427.990.64171forward
CNT30594303Brassica junceaEragrostis curvula44.2930.2791.24194forward
CNT30335796Brassica junceaCynara cardunculus52.7458.0486.15231forward
CNT3049908Brassica junceaCucumis sativus20.3210.8485.3989forward
CNT3039761Brassica junceaMarchantia polymorpha24.899.8182.57109forward

Expression of CNT3073928

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MNRMRSLSHHDFNELIVVDLTIAINISLTDHLINFLIGQLLPKVSHHMSKLSRGDETVLVLIKHPEGFLEL*

>peptide 2 (49 aa)
EYQIVKGYANHEFILHITLTKSKDKRQITDETCRNHSLSRHHHKSFSFL*

Sequence

>CNT3073928
AGAATATCAAATTGTCAAAGGATATGCAAACCATGAGTTCATACTTCACATAACACTAACCAAAAGCAAAGACAAAAGACAAATAACAGACGAAACATGT
CGCAACCATTCACTGTCAAGACATCATCATAAATCGTTCTCTTTTTTATGAATAGGATGAGATCACTTAGCCATCATGACTTTAACGAACTCATCGTAGT
TGATCTGACCATCGCCATCAACATCAGCCTCACGGATCATCTCATCAACTTCCTCATCGGTCAGCTTCTCCCCAAGGTTAGTCATCACATGTCGAAGCTC
AGCCGCGGAGATGAAACCGTTCTGGTCCTTATCAAACACCCTGAAGGCTTCCTTGAACTCTGAGATCTGGTCATCGGTCAGCTGATCCGCCATTTTCCTT
CTTCGAAGCTTTTCTTTTTGGAAATCTGAGAACTTTTT