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Detailed information on CNT3039761


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40642|CML1_ORYSI, E-value = 3e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678111Marchantia polymorphaSetaria viridis9.9939.9389.19111forward
CNT30487977Marchantia polymorphaOlea europaea9.5440.7783.02106forward
CNT30504265Marchantia polymorphaNicotiana attenuata932.7983100forward
CNT30234205Marchantia polymorphaBrassica oleracea9.812182.57109forward
CNT30146219Marchantia polymorphaMedicago truncatula11.4351.2182.68127forward
CNT3073928Marchantia polymorphaBrassica juncea9.8124.8982.57109forward
CNT301326Marchantia polymorphaZea mays9.9932.3688.29111forward
CNT30607166Marchantia polymorphaGossypium raimondii9.2728.2283.5103forward
CNT30367748Marchantia polymorphaSorghum bicolor9.9928.5388.29111forward
CNT3026117Marchantia polymorphaPopulus trichocarpa9.8125.4182.57109forward
CNT30148143Marchantia polymorphaBrachypodium distachyon10.0821.7185.71112forward
CNT30335796Marchantia polymorphaCynara cardunculus9.5426.6383.02106forward

Expression of CNT3039761

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MIVRETAGGSDLLNPRRGTWTTRKSPTHKARTRKGREMVVKLWTRNQTRRNKSRRHDYHDGTGSQGREWKGGPRGSVGERGGGGGSKRPKQLVH

>peptide 2 (34 aa)
GIKTPLVVTTHEKTLIGKNSRANHLAIIIFTNSS*

>peptide 3 (44 aa)
MRNLTVRPRTRPRTSYISLQAKKSTIGGRHEMRGTHHRHPCRTG*

>peptide 4 (51 aa)
MDAEPDETKQESTTRLPRRDGKPRTGMEGRAAGERGGAGRRWRKQKAEATRS

>peptide 5 (91 aa)
MLPAIRIRKRENEHAVTTILLRFSARYKGLNSLGQGHSQGRRDIPRHSTAVITEIATAAAIGLGHRHIRTASPVRKQKKTQTTGNTRTCVI*

Sequence

>CNT3039761
GAGGCATCAAAACGCCACTCGTTGTAACTACACATGAGAAGACATTGATTGGCAAAAATTCTAGAGCTAATCACTTGGCCATCATCATCTTCACAAACTC
TTCGTAGTTGATCTGGCCATCTCCGTCGACGTCTGCCTCGCGGATCATCTCGTCCACTTCGTCGTCGGTAAGCTTCTCGCCCAAATTGCTCCTCCTCGGA
ATCGGTGTCTTTCATTTTCCGGGCCATCAGACTTAAAAACTCCGCAAAGTCGATTGTACCGTTCCCATCGGCGTCCACTTCATTGATCATATCCTGAAGC
TCAGCCTCAGTGGGATTCTGTCCCAAGGACCGCATAACGGTGCCGAGTTCCTTGGTGGTAATGCTGCCTGCAATTCGAATCAGGAAACGTGAGAACGAGC
ATGCAGTGACGACCATCCTGCTGCGGTTTAGCGCACGATACAAAGGTCTTAACAGCTTGGGCCAAGGACATTCGCAAGGGAGGCGAGACATCCCACGACA
CTCCACGGCGGTAATCACAGAAATCGCTACTGCAGCCGCGATCGGATTGGGACACAGACACATTCGAACGGCATCTCCTGTACGCAAACAGAAAAAGACA
CAAACTACCGGTAATACCCGAACATGCGTAATTTGACCGTCAGGCCAAGAACGCGTCCGCGAACAAGCTACATCTCGCTGCAGGCAAAGAAAAGCACGAT
CGGTGGGAGGCACGAGATGAGGGGGACGCACCATCGCCATCCTTGTCGAACAGGCTGAAAGCCTCCTTGAACTCAGCAATCTGCTCCTCGGTAAGCTGCT
CAACCATTTTGCTAGATTGCTCCGAAAGATGATCGTCCGCGAAACAGCAGGTGGTTCAGACTTACTCAACCCTCGACGCGGAACTTGGACAACGCGCAAG
TCCCCTACACACAAAGCACGAACGAGGAAAGGAAGAGAGATGGTTGTTAAGTTATGGACGCGGAACCAGACGAGACGAAACAAGAGTCGACGACACGACT
ACCACGACGGGACGGGAAGCCAAGGACGGGAATGGAAGGGAGGGCCGCGGGGGAGCGTGGGGGAGCGGGGAGGAGGTGGAGGAAGCAAAAGGCCGAAGCA
ACTCGTTCACT