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Detailed information on CNT30371253


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 7e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021397Oryza glumipatulaCitrullus lanatus32.5715.1182100forward
CNT30283673Oryza glumipatulaTriticum aestivum10099.6890.88307forward
CNT30220716Oryza glumipatulaHordeum vulgare74.2710092.11228forward
CNT30383371Oryza glumipatulaTriticum turgidum94.7997.3291.07291forward
CNT30435344Oryza glumipatulaAegilops tauschii10098.7190.88307forward
CNT30611949Oryza glumipatulaArabis alpina38.7634.3988.24119forward
CNT30136247Oryza glumipatulaLolium perenne99.6710089.87306forward
CNT30683531Oryza glumipatulaTriticum urartu96.0996.0993.22295forward
CNT30721349Oryza glumipatulaTriticum spelta96.0998.3393.22295forward

Expression of CNT30371253

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MASLSSRTATSVCSRREWVERTLLYGSTTERRSRRREPRPEPVPPPTALNTRKPWRPVQLSASFLMRSRHRSTISLP

>peptide 2 (94 aa)
LGHKPIEVGVGWALNVEGAAADVIDGLIVEQDSDIGVLKEGVGGEDTVVWLNHRETLKEKGTETGARSSSNSVEHKEALETSAVVGKLPDAVKA*

Sequence

>CNT30371253
ACCTGGGACACAAGCCTATTGAGGTTGGTGTAGGTTGGGCGCTCAATGTCGAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCGAGCAGGACAG
CGACATCGGTGTGCTCAAGGAGGGAGTGGGTGGAGAGGACACTGTTGTATGGCTCAACCACAGAGAGACGCTCAAGGAGAAGGGAACCGAGACCGGAGCC
CGTTCCTCCTCCAACAGCGTTGAACACAAGGAAGCCCTGGAGACCAGTGCAGTTGTCGGCAAGCTTCCTGATGCGGTCAAGGCATAGATCAACAATCTCC
TTGCCAA