Detailed information on CNT30522212


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 2e-46

BLAST vs NONCODE:
NONGMAT000220, E-value = 3e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30296175Setaria italicaTriticum aestivum99.5982.8893.39242forward
CNT30391993Setaria italicaTriticum turgidum97.9410093.28238forward
CNT30435344Setaria italicaAegilops tauschii65.0250.893.04158forward
CNT30136247Setaria italicaLolium perenne64.6151.3191.08157forward
CNT30229091Setaria italicaAnanas comosus54.3236.8784.09132forward
CNT30683531Setaria italicaTriticum urartu65.0251.4794.3158forward
CNT30721349Setaria italicaTriticum spelta61.3249.6794.63149forward
CNT30596030Setaria italicaOryza meridionalis67.4968.3395.73164forward
CNT30174517Setaria italicaVigna angularis56.3868.1683.94137forward
CNT3065151Setaria italicaSelaginella moellendorffii39.0946.1285.2695forward
CNT3040082Setaria italicaMarchantia polymorpha92.1853.3384.38224forward

Expression of CNT30522212

Peptides detected in this lncRNA

>peptide 1 (54 aa)
YLRHEPVEVGVGGALNVKGAAADVIDGLIVKQNSNISVLEEGVGGQDTVVWLNH*

>peptide 2 (48 aa)
MASLSSRTATSVCSRREWVDRTLLYGSTTEVETWGDGYTVNPSLDFLP*

Sequence

>CNT30522212
GTACCTGAGACACGAGCCTGTTGAGGTTGGTGTAGGTGGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGCAGAAC
AGCAACATCAGTGTGCTCGAGGAGGGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACCACTGAGGTGGAGACCTGGGGAGATGGGTACACAGTGAAC
CCGAGCTTGGACTTCTTGCCATAGTCAACAATCTCCTTGCCAA