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Detailed information on CNT30283673


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRB7|TBA_WHEAT, E-value = 3e-43

BLAST vs NONCODE:
NONGMAT000220, E-value = 5e-36

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517675Triticum aestivumJuglans regia45.4523.1885.71140forward
CNT30403515Triticum aestivumBeta vulgaris49.0358.7586.75151forward
CNT30220716Triticum aestivumHordeum vulgare74.0310095.61228forward
CNT30383371Triticum aestivumTriticum turgidum97.08100100299forward
CNT30237104Triticum aestivumBrassica oleracea35.0633.3387.04108forward
CNT30435344Triticum aestivumAegilops tauschii10099.0498.05308forward
CNT3075316Triticum aestivumBrassica juncea44.4846.1386.86137forward
CNT30611949Triticum aestivumArabis alpina37.3433.2489.57115forward
CNT30136247Triticum aestivumLolium perenne99.3510092.48306forward
CNT30689747Triticum aestivumTriticum urartu99.68100100307forward
CNT30619808Triticum aestivumCajanus cajan49.0325.3886.09151forward
CNT30596030Triticum aestivumOryza meridionalis52.9267.9293.25163forward
CNT30371253Triticum aestivumOryza glumipatula99.6810090.88307forward

Expression of CNT30283673

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MASLSRRIDTSVCSRREWVDRTLLYGSTTERRSSRREPRPEPVPPPTALKTRNPWRPVQLSESFLIRSRHRSTISLP

>peptide 2 (85 aa)
LRNKPVEVGVCWALNVKGAAADVIDGLIVKKDRHISVLKEGVGGQDTVVWLNNREALQQKRTKARASSTSNSVEDKESLETSAVV*

Sequence

>CNT30283673
ACCTGAGAAACAAGCCTGTTGAGGTTGGTGTATGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGAAGGATAG
ACACATCAGTGTGCTCAAGGAGGGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACAACAGAGAGGCGCTCCAGCAGAAGAGAACCAAGGCCAGAGCC
AGTTCCACCTCCAACAGCGTTGAAGACAAGGAATCCCTGGAGACCAGTGCAGTTGTCTGAAAGCTTCCTGATACGGTCAAGGCACAGATCAACAATCTCC
TTGCCAAC