Detailed information on CNT30383371


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30403515Triticum turgidumBeta vulgaris47.8355.6486.01143forward
CNT30283673Triticum turgidumTriticum aestivum10097.08100299forward
CNT30220716Triticum turgidumHordeum vulgare76.2510095.61228forward
CNT30435344Triticum turgidumAegilops tauschii10096.1497.99299forward
CNT3075316Triticum turgidumBrassica juncea45.8246.1386.86137forward
CNT30136247Triticum turgidumLolium perenne10097.7192.31299forward
CNT30689747Triticum turgidumTriticum urartu10097.39100299forward
CNT30721349Triticum turgidumTriticum spelta97.9997.6795.56293forward
CNT30619808Triticum turgidumCajanus cajan47.4923.8786.62142forward
CNT30371253Triticum turgidumOryza glumipatula97.3294.7991.07291forward

Expression of CNT30383371

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MASLSRRIDTSVCSRREWVDRTLLYGSTTERRSSRREPRPEPVPPPTALKTRNPWRPVQLSESFLIRSRHRSTIS

>peptide 2 (85 aa)
LRNKPVEVGVCWALNVKGAAADVIDGLIVKKDRHISVLKEGVGGQDTVVWLNNREALQQKRTKARASSTSNSVEDKESLETSAVV*

Sequence

>CNT30383371
CCTGAGAAACAAGCCTGTTGAGGTTGGTGTATGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGAAGGATAGA
CACATCAGTGTGCTCAAGGAGGGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACAACAGAGAGGCGCTCCAGCAGAAGAGAACCAAGGCCAGAGCCA
GTTCCACCTCCAACAGCGTTGAAGACAAGGAATCCCTGGAGACCAGTGCAGTTGTCTGAAAGCTTCCTGATACGGTCAAGGCACAGATCAACAATCTCC