Detailed information on CNT30575848


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 9e-111

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Oryza barthiiOryza sativa64.1882.6699.13577forward
CNT30533600Oryza barthiiEucalyptus grandis31.8176.4788.46286forward
CNT30372848Oryza barthiiArabidopsis thaliana13.5720.3390.98122forward
CNT30727924Oryza barthiiCorchorus capsularis34.7132.6483.01312forward
CNT3071007Oryza barthiiQuercus suber35.3762.2382.08318forward
CNT30379228Oryza barthiiManihot esculenta37.9339.1182.99341forward
CNT30712730Oryza barthiiGlycine max37.2665.4382.39335forward
CNT3098615Oryza barthiiSolanum tuberosum25.5844.8384.35230forward
CNT30184570Oryza barthiiSecale cereale38.3854.4290.43345forward
CNT30295408Oryza barthiiTriticum aestivum38.3855.6590.72345forward
CNT30391405Oryza barthiiTriticum turgidum38.3845.4591.01345forward
CNT30553152Oryza barthiiOryza glaberrima29.738.58100267forward
CNT30439881Oryza barthiiAegilops tauschii38.3844.9889.86345forward
CNT30662251Oryza barthiiTriticum dicoccoides38.3850.8891.01345forward
CNT3079816Oryza barthiiBrassica juncea27.8190.9184.8250forward
CNT30219368Oryza barthiiKalanchoe fedtschenkoi25.5839.3884.78230forward
CNT30648424Oryza barthiiRosa chinensis11.2331.4693.07101forward
CNT30721349Oryza barthiiTriticum spelta15.1345.3394.12136forward
CNT30361562Oryza barthiiSorghum bicolor38.1534.6890.09343forward
CNT30570163Oryza barthiiVitis vinifera37.9341.1881.52341forward
CNT30100809Oryza barthiiOryza rufipogon37.8253.2999.41340forward

Expression of CNT30575848

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MRENTSTTLVELEIMHTALCTLARSPLGTTLGGW*

>peptide 2 (45 aa)
IISDEAVSHNTGHTGYNNEGCKPIKPQTSDHHKQMPRRHTHTATG*

>peptide 3 (62 aa)
MASLSSRTATSVCSRREWVERTLLYGSRSTNTARGTCFPAPVSLKKVLKASSPPPTVLSLGI*

>peptide 4 (98 aa)
MVGRKHEVDPWVGHKVGVGWALNVKGAAADVIDGLIIKQNSNISVLKEGVGREDTVVWLKINKYSTGNMLPSTSLTEEGVESIITSTNSPVTGHLTISL

>peptide 5 (73 aa)
MPHLNPVGHQSTNWMVRLVLMVATAAFTSLGTTSPRYMRQQAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

Sequence

>CNT30575848
TATTATAAGTGACGAAGCGGTCTCACATAACACAGGGCACACAGGTTACAACAACGAGGGTTGTAAGCCCATTAAGCCCCAAACATCAGATCACCACAAG
CAAATGCCTCGAAGACACACGCACACGGCAACAGGATAACTCCACACTGGCAGATCATGGGATAGCAGCAGTTATCAATCAGGCCTTGACACACAGAACA
TCAAGCCCCCAGACGACGACGACTCCTCTAGTACTCGTCACCATCATCGCCATCCTCATTCTCGTCGAACTTGTGGTCGATGCGGGAGAACACCTCCACG
ACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGCACCTTGGCGAGGTCGCCGCTGGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGA
ACCCCGTCGGGCACCAGTCCACGAATTGGATGGTGCGCTTGGTCTTGATGGTGGCGACGGCGGCGTTCACGTCCTTGGGCACGACGTCGCCGCGGTACAT
GAGGCAGCAGGCCATGTACTTGCCGTGGCGAGGGTCGCACTTGGCCATCATGGAGGATGGCTCGAAGGCGCTGTTGGTGATCTCGGCAACGGAGAGTTGC
TCATGGTAGGACGAAAGCATGAAGTGGATCCTTGGGTAGGGCACAAGGTTGGTGTAGGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGA
TGGCCTCATTATCAAGCAGAACAGCAACATCAGTGTGCTCAAGGAGGGAGTGGGTAGAGAGGACACTGTTGTATGGCTCAAGATCAACAAATACAGCACG
GGGAACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACCTCCACCAACAGTCCTGTCACTGGGCATCTGACCATCAGCCTG