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Detailed information on CNT30677979


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 6e-106

BLAST vs NONCODE:
NONGMAT000219, E-value = 4e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Setaria viridisOryza sativa32.6744.4191.61310forward
CNT30533600Setaria viridisEucalyptus grandis33.1984.2289.52315forward
CNT30317272Setaria viridisCorylus avellana20.8650.984.85198forward
CNT30618173Setaria viridisSesamum indicum28.0333.5484.96266forward
CNT3071007Setaria viridisQuercus suber29.9355.5883.1284forward
CNT30379228Setaria viridisManihot esculenta47.7351.9585.65453forward
CNT30507454Setaria viridisNicotiana attenuata29.6143.386.12281forward
CNT30184570Setaria viridisSecale cereale45.4267.9890.72431forward
CNT30391405Setaria viridisTriticum turgidum4758.7691.48446forward
CNT3085161Setaria viridisVigna radiata30.1440.884.27286forward
CNT30555384Setaria viridisOryza glaberrima44.5749.4790.78423forward
CNT30144688Setaria viridisMedicago truncatula21.0756.3487200forward
CNT30439881Setaria viridisAegilops tauschii4758.1590.58446forward
CNT30247895Setaria viridisAvena sativa44.4756.2792.18422forward
CNT30662251Setaria viridisTriticum dicoccoides4765.7891.48446forward
CNT30135921Setaria viridisLolium perenne21.3953.9994.58203forward
CNT30953Setaria viridisZea mays47.7347.8993.38453forward
CNT3041219Setaria viridisChlamydomonas reinhardtii23.0838.4292.69219forward
CNT30609153Setaria viridisGossypium raimondii19.4945.6885.41185forward
CNT30219368Setaria viridisKalanchoe fedtschenkoi24.2439.3883.48230forward
CNT30648424Setaria viridisRosa chinensis19.1856.791.21182forward
CNT30208739Setaria viridisHelianthus annuus21.551.6587.25204forward
CNT30129276Setaria viridisCorymbia citriodora19.1843.5487.36182forward
CNT30719750Setaria viridisTriticum spelta24.6698.3291.88234forward
CNT30597072Setaria viridisOryza meridionalis36.1447.2589.5343forward
CNT30371316Setaria viridisOryza glumipatula42.9934.5890.93408forward
CNT30570163Setaria viridisVitis vinifera41.3147.3483.93392forward
CNT30119652Setaria viridisCitrus clementina23.292983.26221forward
CNT30148523Setaria viridisBrachypodium distachyon24.4535.9788.36232forward
CNT30117950Setaria viridisOryza nivara46.0552.7190.85437forward
CNT30558847Setaria viridisPanicum hallii35.345.3994.03335forward
CNT30724701Setaria viridisLupinus angustifolius47.7340.1284.11453forward

Expression of CNT30677979

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MPHLNPVGHQSTNWMVRLVLMVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIMEDGSKALLVISATDSCSW*

>peptide 2 (39 aa)
MAGVALGHHGGRLKGAVGDLCNRQLLMVGLLGRDDWCIG*

>peptide 3 (30 aa)
MLPSTSLTEEGVESIITSSNGLVAGHLAISL

>peptide 4 (60 aa)
QKRSRTKQVSYNIRCCKRHTTTDNSSNRHTDTQQDKIGATRADHRITAAHRPDTAAGSIV*

>peptide 5 (41 aa)
MRSNLWSMRENTSTTLVELEIMHTARCTLARSPPGTTLGGW*

Sequence

>CNT30677979
CCAGAAACGAAGCAGGACTAAACAAGTTTCTTACAACATAAGATGTTGTAAACGACATACGACGACAGATAACAGTTCAAACCGACACACCGACACACAA
CAAGATAAGATAGGAGCCACTCGGGCAGATCATAGGATAACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACCCTCGT
CTCCTTCCTCGCCCTCGTCGAACTCAGCGCCGACCTCCTCGTAGTCCTTCTCGAGCGCAGCCAGTGAACGAAGGCACGCTTGGCGTACATGAGGTCAAAC
TTGTGGTCGATGCGGGAGAACACCTCGACCACGCTGGTGGAGTTGGAGATCATGCACACGGCACGCTGCACCTTGGCCAGGTCACCGCCAGGCACCACGC
TGGGGGGCTGGTAGTTGATGCCGCACTTGAACCCAGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTGGTCTTGATGGTGGCAACAGCAGCGTTGAC
GTCCTTGGGCACCACATCACCACGGTACATGAGGCAGCAAGCCATGTACTTGCCATGGCGGGGGTCGCACTTGGCCATCATGGAGGACGGCTCAAAGGCG
CTGTTGGTGATCTCTGCAACAGACAGCTGCTCATGGTAGGCCTTCTCGGCAGAGATGACTGGTGCATAGGATGAAAGCATGAAGTGGATCCTCGGGTAGG
GCACCAAGTTGGTGTAGTGACCACGGGCAAAGTTATTGGCAGCATCCTCCTTGCCACTGATGAGCTGCTCAGGGTGGAAGAGCTGGCGGTAAGTACCAGT
CCTCACCTCATCAATCACAGTGGGCTCAAGGTCAACAAAAACAGCACGGGGCACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCA
TCACCTCCTCCAACGGTCTTGTCGCCGGGCATCTGGCCATCAGCCTGAA