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Detailed information on CNT30184570


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 2e-109

BLAST vs NONCODE:
NONGMAT000219, E-value = 5e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Secale cerealeOryza sativa49.5344.9991.08314forward
CNT30677979Secale cerealeSetaria viridis67.9845.4290.72431forward
CNT30712730Secale cerealeGlycine max48.1159.5786.89305forward
CNT30391405Secale cerealeTriticum turgidum73.1961.1398.06464forward
CNT30555384Secale cerealeOryza glaberrima71.7753.2291.21455forward
CNT30439881Secale cerealeAegilops tauschii73.3460.6396.99465forward
CNT30247895Secale cerealeAvena sativa67.9857.4791.65431forward
CNT30662251Secale cerealeTriticum dicoccoides73.1968.4498.28464forward
CNT30136973Secale cerealeLolium perenne38.3357.8693.83243forward
CNT3041219Secale cerealeChlamydomonas reinhardtii34.5438.4289.5219forward
CNT30229012Secale cerealeAnanas comosus32.6524.9788.89207forward
CNT30721351Secale cerealeTriticum spelta34.0732.6398.15216forward
CNT30597072Secale cerealeOryza meridionalis54.147.2590.67343forward
CNT30371316Secale cerealeOryza glumipatula71.6138.4790.97454forward
CNT30106557Secale cerealeOryza longistaminata28.2383.6492.74179forward
CNT30119652Secale cerealeCitrus clementina32.4927.0382.52206forward
CNT30148523Secale cerealeBrachypodium distachyon38.1737.5288.43242forward
CNT30575848Secale cerealeOryza barthii54.4238.3890.43345forward
CNT30117950Secale cerealeOryza nivara73.0355.8591.14463forward
CNT30593783Secale cerealeEragrostis curvula30.636.7489.18194forward

Expression of CNT30184570

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIMDEGSKALLVISATESCSW*

>peptide 2 (99 aa)
AVEAMGVTNQITCLLPRCEAGSNIPQVHTTQQVVNHKHHKSNIQTDKATQADHRIAAYIRSNLWSMREKTSTTLVELEIMHTALWTLARSPPGTTLGGW*

>peptide 3 (46 aa)
CSRGHGCDKPDNMLITKVRSRFKHTTGSYNTTGCKPQTPQIKHSNR*

Sequence

>CNT30184570
TGCAGTAGAGGCCATGGGTGTGACAAACCAGATAACATGCTTATTACCAAGGTGCGAAGCAGGTTCAAACATACCACAGGTTCATACAACACAACAGGTT
GTAAACCACAAACACCACAAATCAAACATTCAAACAGATAAAGCCACTCAGGCAGATCATAGGATAGCAGCGTACATCAGGTCGAACTTGTGGTCGATGC
GGGAGAAGACCTCGACGACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGGACCTTGGCAAGGTCGCCGCCTGGGACGACGCTGGGTGGCTGGTA
GTTGATACCACACTTGAAACCGGTGGGGCACCAGTCCACAAACTGGATTGTGCGCTTCGTCTTGATGGTGGCCACAGCGGCGTTGACATCCTTGGGCACA
ACATCACCACGGTACATGAGGCAGCAGGCCATGTACTTGCCGTGGCGGGGGTCACACTTGGCCATCATGGACGAAGGCTCAAAGGCGCTGTTGGTGATCT
CAGCGACAGAGAGCTGCTCATGGTAAGCCTTCTCAGCTGAGATCACTGGGGCGTAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGT
CTGGAACTCGTTCACATCAACATTCAGAGCACCA