Detailed information on CNT30555384


BLAST search results

BLAST vs Swiss-Prot:
sp|Q53M52|TBA2_ORYSJ, E-value = 5e-114

BLAST vs NONCODE:
NONGMAT000219, E-value = 7e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677979Oryza glaberrimaSetaria viridis49.4744.5790.78423forward
CNT30547493Oryza glaberrimaIpomoea triloba49.2437.6684.8421forward
CNT30184570Oryza glaberrimaSecale cereale53.2271.7791.21455forward
CNT30294619Oryza glaberrimaTriticum aestivum49.3650.1291422forward
CNT30391405Oryza glaberrimaTriticum turgidum57.4364.6990.63491forward
CNT30439881Oryza glaberrimaAegilops tauschii56.0262.4589.98479forward
CNT30247895Oryza glaberrimaAvena sativa54.396289.68465forward
CNT30662251Oryza glaberrimaTriticum dicoccoides57.4372.4290.84491forward
CNT30446538Oryza glaberrimaSaccharum spontaneum57.8963.4689.9495forward
CNT30953Oryza glaberrimaZea mays57.8952.3389.29495forward
CNT30362155Oryza glaberrimaSorghum bicolor57.7845.2888.26494forward
CNT30597159Oryza glaberrimaOryza meridionalis42.6950.4198.08365forward
CNT30104256Oryza glaberrimaOryza rufipogon95.4462.7797.3816forward
CNT30578324Oryza glaberrimaOryza barthii80.4770.0698.11688forward
CNT30582828Oryza glaberrimaEchinochloa crusgalli57.5457.3488.62492forward
CNT30117950Oryza glaberrimaOryza nivara96.6199.6495.64826forward
CNT30593783Oryza glaberrimaEragrostis curvula26.0842.2390.13223forward

Expression of CNT30555384

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

>peptide 2 (49 aa)
ASIASKDSNALSSCFVLRQTTNLNIKDVTKKVHINNTRSQQLELQANPA*

>peptide 3 (36 aa)
MSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

Sequence

>CNT30555384
TAGCATCAATAGCATCAAAAGATTCTAATGCTTTAAGTAGTTGCTTCGTTTTAAGACAAACCACGAACTTGAATATTAAAGATGTCACAAAGAAGGTTCA
CATAAACAACACAAGGTCACAGCAGCTAGAGCTGCAAGCAAACCCGGCATAATCGAAAAGCAAATGTTCTTTCAAAAGCAGACACACAAACTGATAGATA
GAAGCCCACACGGGCAGATCATAGGATAGCAGCAGTAATCAGGCACATTGCCAAGGCAGCAGGAACCCCTGAACCCTCTCTAGTACTCGTCACCCTCATC
ACCCTCGTCACCATCGTCGAACTCGGAGCCGACCTCCTCGTAGTCCTTCTCCAGCGCGGCGAGGTCGAACTTGATGTCGATGCGGGAGAACACCTCGACG
ACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGCACCTTGGCCAGGTCTCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGA
ACCCCGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTCGTCTTGATGGTGGCCACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACAT
CAGGCAGCACGCCATGTACTTGCCGTGGCGCGGGTCGCACTTGGCCATCATGGAGGACGGCTCGAAGGCGCTGTTGGTGATCTCCGCCACGGAGAGCTGC
TCGTGGTAGGCCTTCTCGGCCGAGATCACCGGGGCGTAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGGAACTCGTTGACAT
CCACATTCAGAGCACCGTCGAACCTCAGGGAGGCAGTCAGTGAGGAGATGACCTG