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Detailed information on CNT30721351


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 2e-55

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677693Triticum speltaSetaria viridis34.5937.0691.7229forward
CNT30533600Triticum speltaEucalyptus grandis23.1140.9189.54153forward
CNT30547577Triticum speltaIpomoea triloba28.2534.6986.63187forward
CNT30517711Triticum speltaJuglans regia16.6220.7586.36110forward
CNT30372454Triticum speltaArabidopsis thaliana15.2621.1386.14101forward
CNT30618173Triticum speltaSesamum indicum22.0518.4188.36146forward
CNT30729860Triticum speltaCorchorus capsularis31.5722.5986.12209forward
CNT3071007Triticum speltaQuercus suber23.8730.9283.54158forward
CNT30379228Triticum speltaManihot esculenta37.9228.7885.26251forward
CNT30507454Triticum speltaNicotiana attenuata34.2934.9885.9227forward
CNT30184570Triticum speltaSecale cereale32.6334.0798.15216forward
CNT30295550Triticum speltaTriticum aestivum34.8933.2499.57231forward
CNT30223592Triticum speltaHordeum vulgare27.6446.9285.79183forward
CNT30391405Triticum speltaTriticum turgidum37.9233.07100251forward
CNT30555281Triticum speltaOryza glaberrima38.3730.6891.73254forward
CNT30144688Triticum speltaMedicago truncatula26.1348.7387.28173forward
CNT30439881Triticum speltaAegilops tauschii36.7131.6897.53243forward
CNT30247794Triticum speltaAvena sativa34.7433.5890.43230forward
CNT30662251Triticum speltaTriticum dicoccoides37.9237.0299.6251forward
CNT30445643Triticum speltaSaccharum spontaneum38.3728.6491.73254forward
CNT3010240Triticum speltaZea mays63.644.8885.75421forward
CNT3041150Triticum speltaChlamydomonas reinhardtii25.0836.483.73166forward
CNT30229012Triticum speltaAnanas comosus32.9326.388.07218forward
CNT30217674Triticum speltaKalanchoe fedtschenkoi27.3450.785.08181forward
CNT30204030Triticum speltaHelianthus annuus28.5545.5486.24189forward
CNT30684179Triticum speltaTriticum urartu38.3740.51100254forward
CNT30340361Triticum speltaEragrostis tef26.7433.8491.53177forward
CNT30361411Triticum speltaSorghum bicolor51.0636.1584.02338forward
CNT30359250Triticum speltaLactuca sativa22.3621.7685.14148forward
CNT30371316Triticum speltaOryza glumipatula36.2520.3492.08240forward
CNT3052700Triticum speltaAmborella trichopoda23.4149.0585.16155forward
CNT30106557Triticum speltaOryza longistaminata30.0692.9991.96199forward
CNT30148523Triticum speltaBrachypodium distachyon26.7427.4488.7177forward
CNT30104256Triticum speltaOryza rufipogon38.3719.5492.13254forward
CNT30582828Triticum speltaEchinochloa crusgalli38.0729.3791.27252forward
CNT30117950Triticum speltaOryza nivara38.3730.6492.13254forward
CNT30558847Triticum speltaPanicum hallii38.3734.4292.13254forward
CNT30726259Triticum speltaLupinus angustifolius33.9927.1485.33225forward

Expression of CNT30721351

SRR9114152: 77.94 RPKM

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MGVGKPDNMHIDQGAKQVQTYHRFIQHNRL*

>peptide 2 (31 aa)
MYLPWRGSHLAIMEEGSKALLVISATESCSW*

>peptide 3 (49 aa)
MPSPTYQWTKAAGHVLAVAGVTLGHHGGRLEGAVGDLSDRELLMVSLLS*

Sequence

>CNT30721351
ATGCAGATACTGAAACAGGGAAATGGTGATGGACAGCAGCAGAGGCTATGGGTGTAGGCAAACCAGATAACATGCATATTGACCAAGGTGCGAAGCAGGT
TCAAACATACCACAGGTTCATACAACACAACAGGTTGTAAACCAAACACCACACAGCAAACATTCAAACAGACAGACAACAGATAAAGCCGCTTGGGCAG
ATCACAGGATAGTAGTAGACGAAGGGACGCTTGACGTACATCAGGTCGCAAACTCATCTGCTCTAGTACTCATCACCCTCATCACCGTCCTCGCCCTCGT
CGAACTCAGCGCCAACTTCTTCATAGTCCTTCTCCAGGGCAGCAAGATCCTCACGGGCCTCAGAGAACTCACCCTCCTCCATGCCCTCACCCACGTACCA
GTGGACGAAGGCAGCAGGCCATGTACTTGCCGTGGCGGGGGTCACACTTGGCCATCATGGAGGAAGGCTCGAAGGCGCTGTTGGTGATCTCAGCGACAGA
GAGCTGCTCATGGTAAGCCTTCTCAGCTGAGATCACTGGGGCATAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGAAACTCG
TTCACATCAACATTCAGAGCACCATCAAACCTCAGGGAAGCAGTCAGGGATGAGATGACCTG