Detailed information on CNT30684179


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 6e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677693Triticum urartuSetaria viridis36.5237.0691.7229forward
CNT30223592Triticum urartuHordeum vulgare17.2227.6997.22108forward
CNT30391405Triticum urartuTriticum turgidum42.5835.18100267forward
CNT30555281Triticum urartuOryza glaberrima41.9531.7691.63263forward
CNT30144688Triticum urartuMedicago truncatula31.5855.7786.36198forward
CNT30662251Triticum urartuTriticum dicoccoides42.5839.3899.63267forward
CNT3041150Triticum urartuChlamydomonas reinhardtii26.4836.483.73166forward
CNT30217674Triticum urartuKalanchoe fedtschenkoi28.8750.785.08181forward
CNT30721351Triticum urartuTriticum spelta40.5138.37100254forward
CNT30340361Triticum urartuEragrostis tef28.2333.8491.53177forward
CNT30359250Triticum urartuLactuca sativa23.621.7685.14148forward
CNT30371316Triticum urartuOryza glumipatula39.7121.191.97249forward
CNT3052700Triticum urartuAmborella trichopoda24.7249.0585.16155forward
CNT30106557Triticum urartuOryza longistaminata31.7492.9991.96199forward
CNT30148523Triticum urartuBrachypodium distachyon29.6728.8489.25186forward
CNT30104256Triticum urartuOryza rufipogon41.9520.2392.02263forward
CNT30575645Triticum urartuOryza barthii30.322.4192.11190forward
CNT30117950Triticum urartuOryza nivara41.9531.7292.02263forward
CNT30558847Triticum urartuPanicum hallii43.0636.5992.59270forward

Expression of CNT30684179

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MRQQAMYLPWRGSHLAIMEEGSKALLVISATESCSW*

>peptide 2 (30 aa)
MGVGKPDNMHIDQGAKQVQTYHRFIQHNRL*

Sequence

>CNT30684179
AATCACACGAAGAAACAATACAGAAACAGGGAAATGGTGATTGACAGCAGTAGAGGCTATGGGTGTAGGCAAACCAGATAACATGCATATTGACCAAGGT
GCGAAGCAGGTTCAAACATACCACAGGTTCATACAACACAACAGGTTGTAAACCAAACACCACACAGCAAACATTCAAACAGACAGACAACAGATAAAGC
CGCTTGGGCAGATCACAGGATAGTAGTAGACGAAGGCACGCTTGACGTACATCAGGTCGCAAACTCAGCTGCTCTAGTACTCATCACCCTCATCACCGTC
CTCGCCCTCGTCGAACTCAGCGCCAACTTCTTCATAGTCCTTCTCCAGGGCAGCAAGATCACCACGGTACATGAGGCAGCAGGCCATGTACTTGCCGTGG
CGGGGGTCACACTTGGCCATCATGGAGGAAGGCTCGAAGGCGCTGTTGGTGATCTCAGCGACAGAGAGCTGCTCATGGTAAGCCTTCTCAGCTGAGATCA
CTGGGGCATAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGAAACTCGTTCACATCAACATTCAGAGCACCATCAAACCTCAG
GGAAGCAGTCAGGGATGAGATGACCTG