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Detailed information on CNT30337332


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 3e-176

BLAST vs NONCODE:
NONBNAT005173, E-value = 3e-90

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534636Cynara cardunculusEucalyptus grandis49.8159.7684.35658forward
CNT30315829Cynara cardunculusCorylus avellana49.8169.1985.87658forward
CNT30514020Cynara cardunculusJuglans regia25.7438.4286.47340forward
CNT30702989Cynara cardunculusQuercus lobata50.2669.5381.02664forward
CNT30373848Cynara cardunculusArabidopsis thaliana50.0463.1382.15661forward
CNT30500907Cynara cardunculusCoffea canephora49.7470.1985.24657forward
CNT30616124Cynara cardunculusSesamum indicum49.6657.4985.52656forward
CNT30269327Cynara cardunculusChenopodium quinoa40.1260.5783.96530forward
CNT30728214Cynara cardunculusCorchorus capsularis31.3449.1785.27414forward
CNT30525395Cynara cardunculusPhaseolus vulgaris52.9168.684.12699forward
CNT30628736Cynara cardunculusVigna unguiculata43.9178.3884.31580forward
CNT30709739Cynara cardunculusGlycine max41.0356.9984.5542forward
CNT3046618Cynara cardunculusPrunus dulcis49.3677.9984.66652forward
CNT30633439Cynara cardunculusCapsicum annuum49.6672.2586.59656forward
CNT3091443Cynara cardunculusSolanum tuberosum48.6863.8586.63643forward
CNT30562269Cynara cardunculusActinidia chinensis45.1262.6785.07596forward
CNT3088186Cynara cardunculusVigna radiata52.5463.6782.71694forward
CNT30538977Cynara cardunculusBrassica napus44.1370.581.82583forward
CNT30234343Cynara cardunculusBrassica oleracea43.9858.6382.1581forward
CNT30508942Cynara cardunculusSolanum lycopersicum49.4362.1386.52653forward
CNT30173250Cynara cardunculusTrifolium pratense43.349.6180.94572forward
CNT30146374Cynara cardunculusMedicago truncatula50.4270.8584.68666forward
CNT30310534Cynara cardunculusCamelina sativa45.4250.6882.33600forward
CNT3079851Cynara cardunculusBrassica juncea39.4450.6882.73521forward
CNT30598305Cynara cardunculusFraxinus excelsior31.9561.7984.36422forward
CNT30609649Cynara cardunculusGossypium raimondii43.6876.2283.71577forward
CNT30217700Cynara cardunculusKalanchoe fedtschenkoi33.5456.1584.65443forward
CNT30202642Cynara cardunculusHelianthus annuus24.9859.2593.03330forward
CNT30714756Cynara cardunculusMalus domestica golden40.0552.1285.26529forward
CNT30623366Cynara cardunculusDaucus carota49.8163.2185.11658forward
CNT30621493Cynara cardunculusCajanus cajan50.0449.2586.38661forward
CNT30153357Cynara cardunculusPrunus persica49.8137.2684.65658forward
CNT30429024Cynara cardunculusPapaver somniferum49.3652.9781.29652forward
CNT30119285Cynara cardunculusCitrus clementina49.8173.684.95658forward
CNT30725273Cynara cardunculusLupinus angustifolius45.5758.4586.71602forward

Expression of CNT30337332

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MLFHLFSVLSCPNLNAAPHWRREVFVFSCPNLNAAPHWRREVFVFSCPTYQTRRNKTTKRNTCMQVKY*

>peptide 2 (54 aa)
MQKSKPMLNKCKIRTNLLKNSHMLLHINSQTLHLSKLSHIYTCQVYFPGTKFVA*

>peptide 3 (48 aa)
MPHHTGDEKFLYSPVPRTKHVGTKQPKEIHVCKLNTNQIQCEQLTCRK*

>peptide 4 (29 aa)
MAHLQWMTSSSRFLAKVSGSAESPAVSQP*

>peptide 5 (31 aa)
MGQSYHQGKVGRQPHQGVHRQFCNPQQHPSR*

>peptide 6 (35 aa)
MENMANLPFFISFTFSSAKASGSSASPNGSKLPPG*

>peptide 7 (35 aa)
MGFQKQPVWLLSSSLKPVHSQKAQNQMELLSLLVQ*

>peptide 8 (35 aa)
MNQTWVAQVVEPTLAEDLGSSLEPYCLTELDTISG*

Sequence

>CNT30337332
TAAGTGACATGGCTGTTTTGTAATTTACAGATCTTGTCCCATCTCCCTCATGTTGTTCCATCTATTTTCAGTTTTATCCTGTCCCAATCTAAATGCCGCA
CCACACTGGAGACGAGAAGTTTTTGTATTCTCCTGTCCCAATCTAAATGCCGCACCACACTGGAGACGAGAAGTTTTTGTATTCTCCTGTCCCACGTACC
AAACACGTAGGAACAAAACAACCAAAAGAAATACATGTATGCAAGTTAAATACTAATCAAATACAATGCGAGCAACTAACTTGTAGAAAGTGACTTGACT
TCAACCATGATGTTTGCTAAGTAATGAGCAGGTATAGGTCATGCAGAAAAGTAAACCAATGCTAAACAAATGTAAAATTAGAACAAACTTGCTCAAAAAC
AGCCATATGCTATTGCATATTAATTCACAAACATTGCATTTATCTAAATTATCTCATATATATACATGCCAAGTTTACTTTCCAGGGACGAAGTTTGTAG
CATAGGACCAAGCATTGTTGGCAACGGGGTCAGCTACGTGGTCAGCTAGGTTCTCCAATGGTCCCTTTCCAGTGACAATGGCTTGAACAAAGAAACCAAA
CATGGAGAACATGGCTAACCTACCATTCTTTATCTCCTTCACCTTCAGCTCTGCAAAAGCCTCTGGGTCATCGGCAAGCCCCAATGGGTCAAAGCTACCA
CCAGGGTAAAGTGGGTCGACAACCTCACCAAGGGGTCCACCGGCAATTCTGTAACCCTCAACAGCACCCATCAAGATGACTTGAGTAGCCCAAATGGCCA
AGATGCTCTGGGCATGAACCAAACTTGGGTTGCCCAAGTAGTCGAGCCCACCCTCGCTGAAGATCTGGGCTCCAGCCTTGAACCATACTGCCTCACCGAA
CTTGACACCATTTCTGGCTAAAAGCTCAGGGAAGACGCATCCTAGAGCTCCAAGCATGGCCCATCTGCAGTGGATGACTTCAAGTTCACGGTTCTTGGCA
AAGGTTTCGGGGTCTGCCGAAAGCCCAGCAGTGTCCCAGCCGTAGTCACCAGGGAATTCACCAGTCAGGTAGCTTGGGGCCTCGCCGGAGAATGGGCCCA
AGTACTTGACACGGTCAGGGCCGTACCATGGGCTTCCAGAAGCAACCTGTTTGGCTGCTGTCTTCCTCATTGAAACCCGTCCATTCCCAGAAAGCTCAGA
ACCAGATGGAGCTACTTTCACTGCTTGTCCAGTAAAAAGAGAGGAGAGAGCCATGGTTGAGGCAGCCATTGTTGAGCTTGGATGGGATTAGAAGATGGTT
TGAAAGTAGGAGACTTGGGTG