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Detailed information on CNT30234343


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZ87|CB1B_ARATH, E-value = 4e-154

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316082Brassica oleraceaCorylus avellana58.9361.4182.36584forward
CNT30373848Brassica oleraceaArabidopsis thaliana66.262.6690.09656forward
CNT30728214Brassica oleraceaCorchorus capsularis31.7937.4186.98315forward
CNT30313780Brassica oleraceaCamelina sativa76.5966.9989.72759forward
CNT3079851Brassica oleraceaBrassica juncea75.0872.3787.63744forward
CNT30263433Brassica oleraceaBrassica rapa39.2587.0297.94389forward
CNT30359492Brassica oleraceaLactuca sativa54.3963.0482.37539forward
CNT30417231Brassica oleraceaPapaver somniferum28.3637.7784.34281forward
CNT30119285Brassica oleraceaCitrus clementina58.9365.3282.02584forward
CNT30337332Brassica oleraceaCynara cardunculus58.6343.9882.1581forward

Expression of CNT30234343

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MGCLMGPLAWLRSSSLSHGRFQGLLMLQGRREPLLRRPLRLSAERNKTFIGCCL*

>peptide 2 (29 aa)
MAHLQWITSSSRFLANVSGSAERPAVSHP*

Sequence

>CNT30234343
TGATAACAAAAAAACATAAATCCATTTCCATTTAGTTCTACGACACAGTTGATAAGACAAAGAGTTATTGGATTAATGGTAAATCATACAAATACTTGCA
AATTTTACATCTAAACAACATCTCTTTCTCCTCTTACACTCACAAGAAGCAAATACTGAAGCAAATTACAGATAAAAACATCGCTCACTTTCCGGGAACG
AAGTTGGTAGCAAAGGCCCATGCATTGTTGTTAACTGGATCAGCCAAATGGTCCCTTACCAGTGACAATAGCTTGAACAAAGAATCCAAACATAGAGAAC
ATAGCCAATCTTCCGTTCTTGATCTCCTTCACCTTCAACTCCGCGAAGGCCTCTGGGTCAGTAGCCAAACCCAACGGGTCAAAGCTGCCACCTGGGTAAA
GCAAGTCCTCGGCCTCTCCCAACGGCCCATCTCCTGCGACTCTGTAACCTTCAACGGCTCCCATCAAGATCACTTGAGTAGCCCAAATAGCCAAGATGCT
CTGAGCGTGAACCAAGCTAGGGTTTCCCAAGTAATCAAGTCCTCCTTCGCTGAAGATCTGCGAACCGGCCTTGAACCAAACCGCCTCTCCGAACTTGACT
CCGTTCCTGGCCAACAGCTCCGGGAAGACGCAGCCTAGGGCTCCGAGCATGGCCCACCTGCAGTGGATAACTTCTAGCTCACGGTTCCTCGCGAACGTCT
CGGGATCGGCTGAGAGACCTGCGGTGTCCCATCCGTAGTCTCCTGGGAACTCTCCGGTAAGGTAGCTCGGTGGCTCGCCGGAGAATGGGCCCAAGTACTT
GACTCTCTCGGATCCGTACCATGGGCTGCCTGATGGGCCCTTTGGCTTGGCTACGGTCTTCCTCATTGTCACACGGCCGCTTCCAAGGACTTCTGATGCT
GCAGGGGAGGAGAGAGCCATTGTTGAGGCGGCCATTGCGGTTGAGTGCTGAGCGAAATAAAACGTTTATTGGTTGTTGTTTATGAGCCAAG