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Detailed information on CNT30429024


BLAST search results

BLAST vs Swiss-Prot:
sp|P27495|CB24_TOBAC, E-value = 2e-164

BLAST vs NONCODE:
NONSTUT002514, E-value = 8e-29

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702989Papaver somniferumQuercus lobata53.3768.880.67657forward
CNT30504491Papaver somniferumNicotiana attenuata53.4569.4182.22658forward
CNT3046618Papaver somniferumPrunus dulcis53.6178.9581.67660forward
CNT30633730Papaver somniferumCapsicum annuum47.9364.5582.03590forward
CNT3091768Papaver somniferumSolanum tuberosum46.4755.3282.52572forward
CNT30508942Papaver somniferumSolanum lycopersicum50.9359.6682.3627forward
CNT30146084Papaver somniferumMedicago truncatula54.2664.3580.09668forward
CNT30609649Papaver somniferumGossypium raimondii47.8577.8180.14589forward
CNT30202642Papaver somniferumHelianthus annuus25.8357.0981.45318forward
CNT30623258Papaver somniferumDaucus carota45.4956.882.14560forward
CNT30153357Papaver somniferumPrunus persica48.0133.4782.06591forward
CNT30705057Papaver somniferumPrunus avium42.326381.96521forward
CNT3055180Papaver somniferumAmborella trichopoda48.4257.780.54596forward
CNT30337332Papaver somniferumCynara cardunculus52.9749.3681.29652forward

Expression of CNT30429024

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MGMREPWMPFICFAKEKIEKAAEEGILVVVFDEFILMGSSCLFYKTLWGQ

>peptide 2 (39 aa)
MSGRITLLLSTDKGTGNAQNDISKQISMTDYLQAKNECT*

>peptide 3 (38 aa)
MPLGPLQVLRGQSYHLGKVGRRSHLVDHQQLCIPQQLP*

>peptide 4 (35 aa)
MENIASLPFLSSFTFSSANASGSSASPKGSKLSPG*

Sequence

>CNT30429024
TTGAAAGTTGAAAGATAATTTTATTCCTTTTATTTTAGTTGACAATGGGATTCAAACCCTTTGAATGTAAAGTACTGCACATTACTGTAATGGAATGAGT
GGAAGGATCACACTACTTTTGTCTACAGATAAAGGGACTGGAAACGCACAAAATGATATTTCAAAACAGATTTCAATGACAGATTATTTACAAGCTAAAA
ATGAATGTACATGATAAAATAAGAAGTAGAGAAGAAAAAATTGAGCTCCAATGCCTTTGAAGAGAGATCATCTTAGTTAACTGTCATGAATGTTTTCACT
TTCCTGGAGCAAAGTTGGTAGCATATGACCAAGCATTGTTGTTTACGGGGTCAGAAAGATGATCAGCCAGGTTCTCTAGAGGACCTTTGCCGGTAACAAT
AGCCTGAACAAAGAAACCGAACATGGAGAACATAGCAAGTCTCCCGTTCTTAAGTTCCTTTACCTTCAGCTCAGCAAATGCCTCTGGGTCCTCTGCAAGT
CCTAAGGGGTCAAAGCTATCACCTGGGTAAAGTGGGTCGACGATCTCACCTAGTGGACCACCAGCAACTCTGTATCCCTCAACAGCTCCCATAAGGATAA
CTTGAGTGGCCCAAATCGCCAAGATGCTCTGAGCATGAACTAAGCTGGAGTTCCCCAAGTAGTCAAGTCCACCTTCACTGAAAATCTGAGAACCAGCTTT
GAACCAGACCGCTTCACCAAACTTAACTCCATTTCTAGAGAGAAGTTCAGGGAAAACACACCCCAAAGCGCCGAGCATGGCCCACCTGGAATGAATCACT
TCCAGCTCCCGATTCTTGGCAAAGGTCTCTGGGTCTGCAGATAGTCCAGCAGTATCCCATCCGTAATCACCAGGGAATTCACCAGTTAAGTATGATGGAG
ATTCACCGGAGAAAGGTCCAAGGTACTTGACACGGTCTGGACCGTACCATGGACTTCCTGAAGAAGCAGCAGGCTTCTTTGCTGATGTCTTCCTCATCAC
GATCATTCTATTCTTACTGGATCTAACATTGGTTGAGAATTTTGATTGCGAGTTCAAAGTTACAGCTGTGCCTGCAAAAGATGGGGATGAGAGAGCCATG
GATGCCATTTATATGTTTTGCTAAAGAGAAAATAGAAAAGGCTGCTGAAGAAGGTATTTTGGTGGTGGTGTTTGATGAGTTTATATTGATGGGGAGTTCG
TGTCTCTTTTATAAGACATTATGGGGCCAGG