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Detailed information on CNT3079851


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 5e-145

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316082Brassica junceaCorylus avellana58.2762.9982.64599forward
CNT30373848Brassica junceaArabidopsis thaliana78.677.1787.5808forward
CNT30728214Brassica junceaCorchorus capsularis27.0433.0286.69278forward
CNT30541860Brassica junceaBrassica napus50.6885.6995.01521forward
CNT30234343Brassica junceaBrassica oleracea72.3775.0887.63744forward
CNT30313686Brassica junceaCamelina sativa81.2373.788.86835forward
CNT30359492Brassica junceaLactuca sativa50.3960.5883.78518forward
CNT30337332Brassica junceaCynara cardunculus50.6839.4482.73521forward

Expression of CNT3079851

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWITSSSRFLANVSGSAERPAVSHP*

>peptide 2 (64 aa)
MGCLMVPLAWRQSSSSSHGRFRGLLMLPEKASRPFRRRQGRREPLLKRPLKFLFFFVFFLVTDL*

>peptide 3 (46 aa)
MVSEILQRSLTSDNGLNEESKHREHSQSSVLDLLHLQLCKSLWVGS*

>peptide 4 (30 aa)
QFSYFTMQVKRETSYLINDKSYKDLTNFYI*

>peptide 5 (30 aa)
MGRSCLLDKASPRPLPMVPLRRLCNPQQLP*

Sequence

>CNT3079851
ACCAATTTAGTTATTTCACAATGCAAGTTAAGAGGGAAACGAGCTATTTGATTAATGATAAATCATACAAAGACTTGACAAATTTTTACATCTGAAAGTC
TCAGCCACCCATCACAAACACAAAACCCTTTCCTCACTCTCACTCGAATTTCGAAAAGACAGAAGCAAATTACAAACTGATAAAACTTCGCTCACTTTCC
GGGAACGAAGTTGGTGGCGAAGGCCCATGCGTTGTTGTTGACTGGATCAGCCAAATGGTCAGCGAGATTCTCCAACGGTCCCTTACCAGTGACAATGGCT
TGAACGAAGAATCCAAACATAGAGAACATAGCCAATCTTCCGTTCTTGATCTCCTTCACCTTCAACTCTGCAAAAGCCTCTGGGTCGGTAGCTAGGCCCA
ATGGGTCGAAGCTGCCTCCTGGATAAAGCAAGTCCTCGGCCTCTCCCAATGGTCCCTCTCCGGCGACTCTGTAACCCTCAACAGCTCCCATGAGGATCAC
CTGAGTGGCCCAAATGGCTAAGATGCTCTGAGCGTGAACCAAGCTTGGGTTTCCCAAGTAATCAAGCCCTCCTTCGCTGAAGATCTGTGAACCGGCCTTG
AACCAAACCGCCTCTCCGAACTTGACTCCGTTCCTGGCCAACAACTCCGGGAAGACACAGCCTAGGGCTCCAAGCATGGCCCACCTGCAGTGGATAACTT
CTAGCTCACGGTTCCTTGCAAATGTCTCGGGATCGGCTGAGAGACCGGCAGTGTCCCATCCGTAGTCACCTGGGAACTCTCCGGTAAGAATGGACCCAAG
TACTTGACTCTTTCGGAACCGTACCATGGGCTGCCTGATGGTCCCTTTGGCTTGGCGACAGTCTTCCTCATCGTCACACGGCCGCTTCCGAGGACTTCTG
ATGTTGCCGGAGAAAGCTTCACGGCCTTTCCGGCGAAGGCAGGGGAGGAGAGAGCCATTGTTGAAGAGGCCATTGAAGTTTCTTTTTTTTTTTGTTTTTT
TTTTGGTGACTGACTTGTGAGTGAGAGT