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Detailed information on CNT30500907


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 0.0

BLAST vs NONCODE:
NONMTRT001605, E-value = 4e-79

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315824Coffea canephoraCorylus avellana71.4763.2985.95669forward
CNT30514316Coffea canephoraJuglans regia48.7257.0782.46456forward
CNT30616124Coffea canephoraSesamum indicum70.4157.7686.65659forward
CNT30269327Coffea canephoraChenopodium quinoa56.360.2382.54527forward
CNT30728214Coffea canephoraCorchorus capsularis44.7649.7685.2419forward
CNT30380511Coffea canephoraManihot esculenta52.4669.7483.91491forward
CNT30525395Coffea canephoraPhaseolus vulgaris70.0964.3881.71656forward
CNT30629263Coffea canephoraVigna unguiculata63.1457.4385.11591forward
CNT30504491Coffea canephoraNicotiana attenuata70.4169.5187.41659forward
CNT30709739Coffea canephoraGlycine max57.3756.4784.36537forward
CNT3046618Coffea canephoraPrunus dulcis71.4780.0281.91669forward
CNT30633494Coffea canephoraCapsicum annuum70.8372.5487.93663forward
CNT3091778Coffea canephoraSolanum tuberosum71.7973.2886.46672forward
CNT30562267Coffea canephoraActinidia chinensis70.6263.883.81661forward
CNT3088186Coffea canephoraVigna radiata71.3761.2883.98668forward
CNT30508697Coffea canephoraSolanum lycopersicum71.7972.5786.61672forward
CNT30173250Coffea canephoraTrifolium pratense61.3249.7881.01574forward
CNT30146374Coffea canephoraMedicago truncatula69.9869.6883.51655forward
CNT30609649Coffea canephoraGossypium raimondii64.4279.6685.9603forward
CNT30714756Coffea canephoraMalus domestica golden50.6446.786.71474forward
CNT30623366Coffea canephoraDaucus carota70.7363.5983.99662forward
CNT30621493Coffea canephoraCajanus cajan70.1948.9684.47657forward
CNT30359492Coffea canephoraLactuca sativa66.2472.5183.23620forward
CNT30153357Coffea canephoraPrunus persica71.4737.8882.21669forward
CNT30705057Coffea canephoraPrunus avium60.3668.3283.36565forward
CNT30337332Coffea canephoraCynara cardunculus70.1949.7485.24657forward
CNT30725332Coffea canephoraLupinus angustifolius70.6264.1784.57661forward

Expression of CNT30500907

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWITSSSRFLAKVSGSADSPAVSQP*

>peptide 2 (46 aa)
MPLDRQQGLMGQNCHLGRLGQSPHRVVHRQYGNPQQLPSRQLGKPR*

>peptide 3 (34 aa)
LGAHYTHFWIHKLQSPLKLIFQGQSLLHKPKRCC*

>peptide 4 (43 aa)
MAWTKKPNIENMANLPFLISFTFSSANASGSSARPNGSKLPPG*

Sequence

>CNT30500907
TTAGGGGCTCACTATACACACTTTTGGATTCACAAATTACAATCACCGCTAAAACTCATTTTCCAGGGACAAAGTTTGTTGCATAAGCCCAAGCGTTGTT
GTTAACTGGATCCGCAAGGTGGTCAGCAAGATTCTCCAATGGACCCTTTCCAGTGACTATGGCCTGGACAAAGAAGCCGAACATTGAGAACATGGCCAAC
CTACCATTCTTGATCTCCTTCACCTTTAGCTCAGCAAATGCCTCTGGATCGTCAGCAAGGCCTAATGGGTCAAAACTGCCACCTGGGTAGATTGGGTCAG
TCACCTCACCGAGTGGTCCACCGGCAATACGGTAACCCTCAACAGCTCCCATCAAGACAACTTGGCAAGCCCAGATAGCCAAGATGCTTTGGGCGTGGAT
CAAGTTTGGGTTGCCCAGGTAGTTGAGTCCACCCTGCTGGAAGATTTGGGATCCAGCCTTGAACCACACAGCCTCACCGAACTGGACTCCATTTCGAGAC
AAGAGCTCGGGGAAGACGCATCCAAGGGCTCCAAGCATGGCCCATCTGCAGTGGATCACCTCGAGCTCACGGTTCTTGGCAAAGGTCTCGGGATCAGCTG
ACAGCCCAGCAGTGTCCCAACCGTAGTCTCCGGGGAATTCGCCGGTGAGGTAGCTTGGGGGCTCACCGGAGAATGGGCCCAAGTACTTAACACGGTCTGG
ACCGTACCATGGGCTGCCGGATGGGGAAGGCCTGGAAGTTCTCTTCATTGAGATCCTTCCATTTCCCATCAGCTCAGGGGCGGAGGGGTTGAGTTTCACC
GCCTTTCCGGCGAAGGACGGGGAGGAGAGAGCCATAGTTGAGGCAGCCATTGTATGATTGAGGTTAGCAACTGAATGGAACTATTGAAGGCAGCAGGAAT
TACACAATGCTGCTTGTGGCTTGAGTTTGATGGCCC