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Detailed information on CNT30702989


BLAST search results

BLAST vs Swiss-Prot:
sp|P27492|CB21_TOBAC, E-value = 1e-127

BLAST vs NONCODE:
NONSTUT001352, E-value = 6e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316100Quercus lobataCorylus avellana70.5871.4781.45674forward
CNT30514020Quercus lobataJuglans regia24.426.3385.41233forward
CNT30380492Quercus lobataManihot esculenta27.4335.7983.97262forward
CNT30525395Quercus lobataPhaseolus vulgaris69.7465.3680.33666forward
CNT30629553Quercus lobataVigna unguiculata45.0354.0981.4430forward
CNT30709643Quercus lobataGlycine max45.3444.9682.91433forward
CNT3046618Quercus lobataPrunus dulcis68.878.5979.6657forward
CNT30633518Quercus lobataCapsicum annuum68.6971.7781.1656forward
CNT3091167Quercus lobataSolanum tuberosum68.6952.3181.25656forward
CNT30508942Quercus lobataSolanum lycopersicum68.3862.1380.86653forward
CNT30609649Quercus lobataGossypium raimondii62.8379.2680.83600forward
CNT30202642Quercus lobataHelianthus annuus34.1458.5381.6326forward
CNT30623258Quercus lobataDaucus carota69.2167.0480.94661forward
CNT30621493Quercus lobataCajanus cajan70.1649.9380.6670forward
CNT30359492Quercus lobataLactuca sativa65.0372.6379.87621forward
CNT30153357Quercus lobataPrunus persica69.4237.5480.39663forward
CNT30429024Quercus lobataPapaver somniferum68.853.3780.67657forward
CNT30572261Quercus lobataVitis vinifera26.3930.8182.94252forward
CNT30705057Quercus lobataPrunus avium58.7467.8479.86561forward
CNT3036398Quercus lobataCucumis melo27.6447.6586.74264forward
CNT30337332Quercus lobataCynara cardunculus69.5350.2681.02664forward
CNT30725254Quercus lobataLupinus angustifolius70.2666.1780.63671forward

Expression of CNT30702989

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MISKVLQRPLSSDNGLLKKPKHGEHGEAAILNFLHLKLSKCLWIISKPQRIKAATWV*

>peptide 2 (30 aa)
MGSQRKHLAFLLSSSSKLCRCCYGQLMITL*

>peptide 3 (58 aa)
MACSKNPNMENMARRPFLISFTLSSANASGSSASPKGSKLPPGYRGSVTSPRGPPAMR*

Sequence

>CNT30702989
GATTAATTGATTACATATTTGTCCAAGCTTTTGTTACATGTAGGCAAAACACTAGTTAGCAAATTCAATTTTTGTTCATGAGTTGGTTTCCTCACTTTCC
AGGGACAAAGCTTGTGGCATAAGCCCAGGCAATGTTGTTCACTGGGTCAGCAAGATGATCAGCAAGGTTCTCCAAAGGCCCCTTTCCAGTGACAATGGCC
TGCTCAAAAAACCCAAACATGGAGAACATGGCGAGGCGGCCATTCTTAATTTCCTTCACCTTAAGCTCAGCAAATGCCTCTGGATCATCAGCAAGCCCCA
AAGGATCAAAGCTGCCACCTGGGTATAGAGGGTCAGTGACCTCACCTAGAGGTCCCCCAGCAATGCGGTAACCCTCAACAGCACCCATGAGAATAACCTG
TGTAGCCCAGCTAAAATGCTCTGAGCATGAATTAGGCTTGGGTTTCCAAGGTAGTCAAGACCACCCTCACTGAAGATTTGAGCACCAGCTTTGAACCATA
CTGCTTCGCCAAACTTCACTCCATTCCTTGCAAGAAGCTCTGGGAATACACATCCTAGAGCACCAAGCATTGCCCACCTGCAATGAATAACCTCAAGCTC
CCGGTTCTTGGCGAAAGTTTCCGGGTCTGCTGATAGCCCTGCAGTGTCCCATCCATAGTCACCGGGGAATTCACCTGTTAAGTAAGATGGAGGCTCACCA
GAGAATGGTCCAAGGTATTTGACGCGATCAGGGCCATACCATGGGCTCCCAGAGGAAGCACCTGGCCTTCCTGCTGTCTTCCTCATCGAAACTCTGCCGT
TGTTGCTACGGGCAGTTGATGATAACTCTGTAGGTGTGATCAAAGGAACCACCTTTCCTGTGAATGGAGAAGACAGGGCCATGGTTGCCATGAATTATTA
AGCCTTTTGGAGTGAAGGTGGTGGGTGATACCTGATACTGATACAAGAAACTTAC